XLOC_017877 (ccdc85cb)


Basic Information

Item Value
gene id XLOC_017877
gene name ccdc85cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 5158419 ~ 5229157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035292
GTGAATATTTTGAAACGCAGCTCTTGAAACCTGTAAGATCGCACAtgatctaaaatattatttgtttgcctcgagaaagaaaaaaacaccgTTTCATTTTAAATCATGGTTGTGGATACACATCTCGCGGATATTTTAGGACATGTAAATACATGGATGATTCCAGAATTGTTGGTAAGTGCGGCACcattaaaagtaacgttaatgGTTTGGGAACACATTTGTTATTAAATTTCTCCTGTACGTGTAAATATAGAATCTAACGCAtgagtattttgtttttaaacgaGTCTTATTGCGTTTTCGTGGTGCGAAGAGCAACactgtcacatttgcattgagTATTTTAATACTCCGAGACTGTAAGCGAGAGCCATGATGGCCAAACACTGTCCTAATGATGACCTGAGTAAGATCCCAGACGAGGAACTGGTCAGGTGGAGCAAAGAAGACTTGATCAGGAGACTGAGGAGGGTTGATGGTGAGAAGATGAGCCTGATGCTGGAGCATAGCAACATGATGAAGGATGTCAACCGCAGTCTGCAGGTGCACCTCCACGAGATTCGCAATCTCAAGGAGATCAACCAGAAACTGCAAGACGACAACCAGGAGCTCAGGGAACTCTGCTGCTTTCTGGACGACGACCGGCAGAAAGGTAAGAAGCTGTCTCGGGAATGGCAGAGGTTTGGGAAGTTCACGGCGAGCTCCGTATGGAAGGAGGTGAGCACCTATCAGCAGAAGCTCAAGGAGCTGGAGATCAACCAGGAAAACGTTCTGCGGGAGAACGCAGAGCTGAAAGACATCATTCTCATGTTGGACGAGGACAGGAATGGAGCTGGATCGAGGAGTTCTATTGACAGCCAGTCCAGCCTGAGCAACCTGAACGGAGGATCGGGCACTGTAAGAGATGTTGGCGATGGGAGCAGCACATCCAGCGGTGGAAGCGCTGGCAGTCCAGATCATCATCATAACCATATCCACAAGACTGTAGAAGCGAAGATTGGCACTGTGAGAAGATCAATGGATGATCTGTCGGCTCCGCATCATCACAGGAGCATCCCCGCTGGACTTAATGATGCATCCTCCAACTACATTCGGCAGCTGGAAACCAAGGTCCGGATTCTAGAGGACAATAACAACAAACTGCTGTCACaaCCCTGTAGCCGCTACAGCTTATCAAAGCTGTCCATGAAGTATAATCCAGGAGACCTGCGCGCCCTGCGGAAGGGCATGACCCTCTACCACTCAGAATCACAGCTGTCTTCCCTCCCGCAGAGACAGGAAGCCTTGCTGAATGGCACTGGAAGGCTGCAGACCAGTGAATCTTCTCCCTCCACTGGATTTATCTCATCTGCACAGAAACCTGAAGCTGTGGTTCATGCAATGAAGGTTTTGGAGGTCCATGATAATCTGGAAAAACAGCTTCCAGAGGAAAGTGAGGAAGACCTGAGTGAGAAAGAGAAAGCCATAGTGCGGGAAATGTGCAATGTGGTGTGGAGAAAGCTGGGCGACGCAACAGGAACAAAGCCGTCCCTCCGACAGCAACTCTCTGGTAATCAGTTCAAAGCTCCTCTATAGCGAGAACATCTCCTCATCCTCCATGCAGGACCAAAATGCTTAGGTGACACAAACGCTCCACCTTCTTCCATGTCAGATCATTTGGAGCCAATCGTGCCATTGACGTTGGATCACTGCACACCAGTTTTCAGATTTTCCTTTCAGTGAACGTTCAAAGCAATAATCACATTAACCTAACATTATTACCTAATAATTATATACTTTTCTTTGTTGACATAATGGTTTTGGATTGAATCATGGTTTCGGCCATAATGGTGCATCTTCGATGAGCTTTTGCACCAATCCGGGACCAATGTGGCCATATGTAGACTCAGAGGAGAACCACAAAGGATGATATCATTCGGGTTGAGGATCAAGAAGTCTGGCAGCTAGTCATGTTTGGTAAAGCTTGCCTCTTCTGTTTTCttttacctctttttttttttattatgtcaacGTCATAAAAGCTGAGTCCATCAAACTTGCAAAGCGAGCAATAGCAGATGTTATAGCATCCAGTTTGTGCAGACAATAATCTATAAGACGATGTAAGATATGTATAAAggttttaaatcagtt

Function

symbol description
ccdc85cb Predicted to be located in adherens junction and bicellular tight junction. Predicted to be active in apical junction complex. Is expressed in diencephalon; midbrain; otic vesicle; pronephric duct; and retinal ganglion cell layer. Orthologous to human CCDC85C (coiled-coil domain containing 85C).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-373 Predicted to be located in adherens junction and bicellular tight junction. Predicted to be active in apical junction complex. Is expressed in diencephalon; midbrain; otic vesicle; pronephric duct; and retinal ganglion cell layer. Orthologous to human CCDC85C (coiled-coil domain containing 85C).

Ensembl:

ensembl_id ENSDARG00000079555

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035292 True 2136 mRNA 0.46 7 5158419 5229157

Neighbor

gene id symbol gene type direction distance location
XLOC_017876 NA coding downstream 88229 5068812 ~ 5070190 (-)
XLOC_017874 arid1b coding downstream 105581 4897996 ~ 5052838 (-)
XLOC_017875 BX649499.1 coding downstream 250942 4906078 ~ 4907477 (-)
XLOC_017873 zdhhc14 coding downstream 274746 4827735 ~ 4883673 (-)
XLOC_017872 galca coding downstream 364969 4769762 ~ 4793450 (-)
XLOC_017878 cyp46a1.2 coding upstream 8129 5237286 ~ 5254610 (-)
XLOC_017879 cyp46a1.4 coding upstream 27118 5256275 ~ 5267600 (-)
XLOC_017880 cyp46a1.3 coding upstream 43498 5272655 ~ 5291012 (-)
XLOC_017881 ism2b coding upstream 73029 5302186 ~ 5328637 (-)
XLOC_017882 CABZ01045949.1 coding upstream 92058 5321215 ~ 5321329 (-)
XLOC_017928 CU539064.1 misc upstream 4824248 10053405 ~ 10053701 (-)
XLOC_017869 NA non-coding downstream 662277 4495141 ~ 4496142 (-)
XLOC_017867 NA non-coding downstream 772112 4381929 ~ 4386307 (-)
XLOC_017865 NA non-coding downstream 1012287 4135534 ~ 4146132 (-)
XLOC_017885 BX088548.1 non-coding upstream 384722 5613879 ~ 5613996 (-)
XLOC_017886 CABZ01064253.1 non-coding upstream 766432 5995589 ~ 5995703 (-)
XLOC_017887 CABZ01062797.1 non-coding upstream 783294 6012451 ~ 6023109 (-)
XLOC_017888 CABZ01062796.1 non-coding upstream 799044 6028201 ~ 6035070 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000324_00497914_00498624 NA coding CI01000324 null 497532 ~ 498854 (-)