RNA id: TCONS_00035313


Basic Information

Item Value
RNA id TCONS_00035313
length 4437
RNA type mRNA
GC content 0.54
exon number 30
gene id XLOC_017893
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6308564 ~ 6476705 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTCAGTGCGTGCAGTCCGTGCAGGAGTTCATCCAGGACTCGTTCGTGCCGATGGTGGCCGTCCTGTGCAGTGAGGATGCCGAGAGAGTGACCCGCAAAAACAACCTGAGTTTCCCCGAGCTGCTGCGGCCTTTCTGCCGCCTGACGTCCGAGGGTCATCTGCGGGACCCCAATAACCAGGTGGTCGTGGTGAAGGGCCTGCGGATCAGCGTGACGGGGATCAACACTCGTCCTCCACAGACTCCCGAGCTGCAGAGAGTCCTCAGCCAGGCTGTGTCCATCTGCCAGCCTCCTGAAGGGTCGCCCGCTAACGTCATCACGGCTGGAGACTATGACCTCAACATCAGCGACCGCACGGTCAAAGCGAGCGTTCCCTGGTACTCTGACTGGAAAGAAACACTCACCCAGCTGAGCTCCTCCAAGTACTACACAGCAACAACGCCGTGGTTTGAGACGTACCGGGAGAACTTCCTGCAGTCCATGCCAGCGTCAGAGCACGAGTTTCTCAGCCACTACCTGGCTTGTATGTTGGTGGTCTCGTCCAATGAGGCTGTGCCGACAGAGCAGTTTCTGAAGCTGTCCCAGGAACAGCACCGAattcagcacagtggagattacaCACACCCCAAATGGTTCATTCCCAACACGCTCAAATATTACGTCCTACTGCATGACATCAGCGACGGAGACGAGCAGAGgGCGGACTCTGTGTATGAGGATATGAAGCAGCGGTATGGCACTCAGGGCTGTTACCTGCTCAAGATAAACTCCCGCAGCGGCAGCACTGGTGCGGACGAGCAGATGCCGGACCCCTGGAGTCAGTACTTGCACAAGACCAGCATACACAACCCTGAGCTGTATGAAGAATCTGCAGTGAATAATGCAACTGAAAACAACATCAGCGCAGAGGAAGACGGTCTAGATCCTGCAGTTAGAGACGGTGTTTCAGACACTCATCCTCTTCAGCTTGACTCACCGTCCGATGCTCTCATCGATGAGAGTCAGGCTGTAAACAGTGCAAATATGACGAAAGCTCTGAAGCAAGCCAGTGTGAGCTCTAACAGCAGCCCGACTCCCAGAGGAACATGCCTGACCCTTAATGATCACGACCACATCCGGCAGTTCATCCAGGAGTTCACCTTCAGGGGATTACTGCCGCACATCGAGAAGAACATTCGCCAGCTCAACGACCAGCTTGTCTCCAGAAAAGGACTGAGCCGATCTCTCTTCTCCGCCACTAAGAAGCTGTTTGGTGGTGGGAAGGTTCCAGAGAAGAGCATCGCTGAGCTGAAGAACACTGCAGGCCTGCTATATCCCTCTGAGGCGCCGGAGCTTCAGATCAGGAAGATGGCTGACCTCTGCTTCCTGGTCCAGCATTATGAACTGGCCTACAACTGCTATCACACTGCCAAGAAGGATTTTctgtcagaccaggcaatgttgtATGCGGCTGGAGCGCTGGAGATGGCGGCTGTTGCTGCTTTTCTACAGAGCGGAGCGCCGAGACCGTACCCCGCTCACTACATGGACACCGCCATTCAGACCTACAGAGACGTCTGCAAAAACATGCTTTTGGCTGAGAGGTGTTGCCTTTTAAGTGCTGAGATTTTAAAGAGTCAGGCGAAATATTCAGATGCTGCTACACTTCTGATCAAAATGACCAGTGAGGACTCTGACCTGCGCAGTGCACTTCTGTTGGAGCAGGCGGCTCACTGCTTTATTAATATGCGTAGTCCTATGGTCAGGAAGTTTGCCTTCCACATGATACTGGCCGGCCATCGATTCAGCAAAGCTGGACAGAAGAGACATGCACTGAGATGCTACTGCCAGGCCTTGCAGGTGTATAAAGGTAAAGGTTGGACGCTAGCTGAAGATCACATCAACTTCACCATCGGCCGGCAGTCCTTCACCCTGCGGCAGCCGGAGAACGCCGTGGCCGCTTTCAGACACATCCTCATCAATGACAGCAAACAGTCCGCAGTGCAGCAGGCTGCTTTCCTCAGGGAATACCTCTATGTGTACAAGAGCATGAGTCAGGTGAGCGGTGAGAGCTCTCTCCCACAGCTGCCACTACCCTGCCTGCACAGCTCACAGACGCGCGTGTTCTTCGGCCATGAGCGCAGACTCGCTGAAGGCGAGAAACAGGCTGCTACACACGTGTCTTTGGACCAGGAGTTTGACAGGGATTCTTCTCAGCTGTGGAAAGAGTTGGAGGAGAGAGTCGTCGCCGCAGCAAACAGGGGAAGCGTTCCCAACACCTTCCAGCCATCCCAGTGCTGCCTGAACAGCCAGACGGACAACCTCCGATATCCACTCGCCGTGGTGGAGGAGCCCATCATCGTGGAGGTGGTTTTCCGCAACCCCTTGAAGGTTCCCTTAGCTCTGTCGGCTCTGTCTCTGCTTTGGAAGTTTACAGTTAAAGACTTCTCAGGCCTTCAGGACAGCACAAGCGGAGAAACCATCAGCAATGAGAAAGAGGCAGCGGCTCTGAAAGAAACCACGGCTCTCGATGACATCATCGATACGCAAGTCATTCCAGAGTTCACCATCAGTCCAGAGGAGACCAAAGTGGCACGGTTGAAATTGCTTCCTCGTAAGACAGGAGAGTTGCATGTTCTCGGTGTTGTGTATAACCTGGGCACTGGAGAAGTCGGCAACAGTGAAGGCTCATTGGCCAGTGATGTTATGTGTGTTCGTGGACAGCAAAATCTGGAGATCCAGGGGCCCAGACTCAATgtgaccaaagaagaaaagactTCAGTCAAATATGGACCAGACCGCCGTCTGGACCCCATCATCACCCCAGCCATGCCCTTACTGGAGGTGTTTTTCATCAACTTCCCCACTGGTTTATTGTGCGGTGAGATCCGCAAAGCTTGGGTGGAGTTTGTGAATGTGAGCGGCGTTCCTCTGACGGGTCTTAGAGTAGCGTCCACTCATCCAGAGTTCTTCACGTTTGGGAGCGCCACCTCAGACCTCACCCCAGTCTCCCCTACAGCAGCCGAGCACTGCTCTGCATACAAGACTGTGGCCACAGCGCCATCACAGGCCTCCGTTTCACTCGTGTCTCCGGCAGCGTTCGGGGTCTCCAGCAGTGACCGGCCCATGGTGGCTGAGATCCCCCTATCCCGAGGCTTACTAGGACCAGGGGATGCCTTACAGATCCCGCTATGGCTCAGAGGACCTGACAGAGAGGGCGTTCATGAAATCAACTTCCTCTTTTACTATGAGAGTACAGAGAAGGCTGCCAAACTCAGTCACCGGGTCCTTCGACACACTGCTTTCATATGTGCGAGTCGATCGCTGAGCATCAGAGCCACGGCCAGCCAGAGCAACACGCTGTacagtagagagagagagaaaccagAGGCCGGAGACGGAGAGGAGAAGAACACCAGCATGCTGGTCTTTGTGGATGTGGAGAACGTTAATACGAGTGAAGCAGGTGTTCGTGAGTTCCACATAGTCCAGGTGTCCAGCAGCAGTCGGCAGTGGAGGCTGCACAAGTGCATCAACCCTGTGGGAGACAGAGACACTAAGCTGGCCAGCAGAGAGAGGGGGAAACTGTGCTTCAAAGCCACCAGATGCAAAACAGAGGAAGCTACGTCAGACGCAGCAGGAAAATACACATTTGCCGACCTCAACCTTGGCAGTGAACAAATCGTCAGCTCCACCACTCCGTGTGCTGATTTTTTCTTCCGTCAGGGTTTGCCCTCTGAGCCCAGGAGAGGGGTCGTGTCTGCAGGCGGTGTTAGTCAAATGAGGAGACAGAGCCTCACGCCACAGAGCGGGATTGACGATGATGTGACGAGCATTGTTCGAAAATGCAGCGAAGTAGAGCTTGACATCATCGTCCTCTGGAAGGCATATGTTGTGGAGGACAACAAACAGCTCATTTTAGAGGGACAGCTTCACGTTGCACTGCAAACCATTGGAAAAGAAGCCTGCTCGCTGTCGCAGAAAGAGGAAACTCAAGAAATGGTTCTTCTGAAGTTCAAGCCTGATCTTCCTCCTCCTGTAAGCAAGCCCTCGCTGGAGCAGCTTTCCCACCTCATAAAGACCTGCCTCCACTACCCAGAGTCTTACGATCATCCCTTCCCACAAAAGAGGTTATGTATGGTACCAGTCACCTTGATGCTGTCCAACTGTTCCTTGGCTCAGGTAGACGTCATCATCGATCTGCGGCATAAAACAACCAGCCCAGAGTCCCTGGAAGTGCATGGTTCATTTAGCTGGCTGGGCCAGACCCAATATAAGTTGCAGCTTCAAGCACAAGAGGTCCATAGGCTCTCCCTGAAAGCCTGTTTCTTCCAGGCTGGAGTTTATAATTTGGGCACACCCCGGGTCTTCGCCAAGTTGGCACAGACCAGCGCTATGTGTGAGACCAGCCAGCAGAGCGCCATGCCTGCTCTCATCATCATCAACAGTGTTTGA

Function

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-601 Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8).

Ensembl:

ensembl_id ENSDART00000077095

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036794 lncRNA downstream 93807 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035311 lncRNA downstream 136569 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00035303 lncRNA downstream 273494 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00036447 lncRNA upstream 1805 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036448 lncRNA upstream 661358 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036795 lncRNA upstream 715178 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036796 lncRNA upstream 1135450 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036797 lncRNA upstream 1475077 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00035312 mRNA downstream 29747 6241855 ~ 6278817 (-) True XLOC_017892
TCONS_00035310 mRNA downstream 111575 6166528 ~ 6196989 (-) False XLOC_017890
TCONS_00035309 mRNA downstream 124397 6163932 ~ 6184167 (-) False XLOC_017890
TCONS_00035307 mRNA downstream 176740 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035314 mRNA upstream 39818 6516523 ~ 6532462 (-) True XLOC_017895
TCONS_00035316 mRNA upstream 332069 6808774 ~ 6812688 (-) False XLOC_017897
TCONS_00035318 mRNA upstream 418181 6894886 ~ 6936488 (-) False XLOC_017898
TCONS_00035319 mRNA upstream 418181 6894886 ~ 7000225 (-) True XLOC_017898
TCONS_00035320 mRNA upstream 576165 7052870 ~ 7069612 (-) True XLOC_017899
TCONS_00035301 other downstream 312861 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 694568 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035297 other downstream 987235 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035291 other downstream 1401087 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035282 other downstream 1542078 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035315 other upstream 105094 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 332916 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035322 other upstream 593935 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035333 other upstream 1135577 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 1510245 7986950 ~ 7994084 (-) True XLOC_017910

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_01560871_01627451.mRNA True 4289 mRNA 0.53 28 CI01000051 1560828 ~ 1627665 (-)