Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035303 |
| length | 1061 |
| lncRNA type | lincRNA |
| GC content | 0.41 |
| exon number | 4 |
| gene id | XLOC_017888 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 6028201 ~ 6035070 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0009889 | regulation of biosynthetic process | biological_process |
| GO:0097659 | nucleic acid-templated transcription | biological_process |
| GO:0031326 | regulation of cellular biosynthetic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:1903506 | regulation of nucleic acid-templated transcription | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0032774 | RNA biosynthetic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0034654 | nucleobase-containing compound biosynthetic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0017119 | Golgi transport complex | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| ensembl_id | ENSDART00000194358 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00035302 | lncRNA | downstream | 5092 | 6012451 ~ 6023109 (-) | True | XLOC_017887 |
| TCONS_00036793 | lncRNA | downstream | 958011 | 5068812 ~ 5070190 (-) | True | XLOC_017876 |
| TCONS_00035284 | lncRNA | downstream | 1261552 | 4759477 ~ 4766649 (-) | True | XLOC_017871 |
| TCONS_00035283 | lncRNA | downstream | 1271209 | 4753582 ~ 4756992 (-) | False | XLOC_017871 |
| TCONS_00036792 | lncRNA | downstream | 1532059 | 4495141 ~ 4496142 (-) | True | XLOC_017869 |
| TCONS_00035311 | lncRNA | upstream | 132225 | 6167295 ~ 6171995 (-) | True | XLOC_017890 |
| TCONS_00036794 | lncRNA | upstream | 177776 | 6212846 ~ 6214757 (-) | True | XLOC_017891 |
| TCONS_00036447 | lncRNA | upstream | 443440 | 6478510 ~ 6480513 (-) | True | XLOC_017894 |
| TCONS_00036448 | lncRNA | upstream | 1102993 | 7138063 ~ 7139142 (-) | True | XLOC_017902 |
| TCONS_00036795 | lncRNA | upstream | 1156813 | 7191883 ~ 7211196 (-) | True | XLOC_017904 |
| TCONS_00035299 | mRNA | downstream | 627806 | 5378841 ~ 5400395 (-) | True | XLOC_017884 |
| TCONS_00035298 | mRNA | downstream | 659096 | 5330540 ~ 5369105 (-) | True | XLOC_017883 |
| TCONS_00035296 | mRNA | downstream | 699564 | 5302186 ~ 5328637 (-) | True | XLOC_017881 |
| TCONS_00035295 | mRNA | downstream | 737189 | 5272655 ~ 5291012 (-) | True | XLOC_017880 |
| TCONS_00035294 | mRNA | downstream | 760601 | 5256275 ~ 5267600 (-) | True | XLOC_017879 |
| TCONS_00035307 | mRNA | upstream | 54437 | 6089507 ~ 6131824 (-) | False | XLOC_017889 |
| TCONS_00035306 | mRNA | upstream | 54437 | 6089507 ~ 6131824 (-) | False | XLOC_017889 |
| TCONS_00035308 | mRNA | upstream | 81138 | 6116208 ~ 6131686 (-) | True | XLOC_017889 |
| TCONS_00035309 | mRNA | upstream | 128862 | 6163932 ~ 6184167 (-) | False | XLOC_017890 |
| TCONS_00035310 | mRNA | upstream | 131458 | 6166528 ~ 6196989 (-) | False | XLOC_017890 |
| TCONS_00035301 | other | downstream | 32498 | 5995589 ~ 5995703 (-) | True | XLOC_017886 |
| TCONS_00035300 | other | downstream | 414205 | 5613879 ~ 5613996 (-) | True | XLOC_017885 |
| TCONS_00035297 | other | downstream | 706872 | 5321215 ~ 5321329 (-) | True | XLOC_017882 |
| TCONS_00035291 | other | downstream | 1120724 | 4906078 ~ 4907477 (-) | True | XLOC_017875 |
| TCONS_00035282 | other | downstream | 1261715 | 4753579 ~ 4766486 (-) | False | XLOC_017871 |
| TCONS_00035315 | other | upstream | 546729 | 6581799 ~ 6583670 (-) | True | XLOC_017896 |
| TCONS_00035317 | other | upstream | 774551 | 6809621 ~ 6812680 (-) | True | XLOC_017897 |
| TCONS_00035322 | other | upstream | 1035570 | 7070640 ~ 7071611 (-) | False | XLOC_017900 |
| TCONS_00035333 | other | upstream | 1577212 | 7612282 ~ 7629271 (-) | True | XLOC_017907 |
| TCONS_00035337 | other | upstream | 1951880 | 7986950 ~ 7994084 (-) | True | XLOC_017910 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000324_01412004_01454010.mRNA | True | 1810 | mRNA | 0.46 | 8 | CI01000324 | 1411843 ~ 1454597 (-) |
