RNA id: TCONS_00035294


Basic Information

Item Value
RNA id TCONS_00035294
length 1843
RNA type mRNA
GC content 0.42
exon number 15
gene id XLOC_017879
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 5256275 ~ 5267600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGATAGTAGTTATAGGCAGTGTGCAGACGTTTACAGTACAAAGCCATCATGATCTTAGAATGGAtcttatatataattttttacctGCTCTCTGCTGTTTTTACTGCATTTCTTGCGTATTGTCTGTACATTCATTATGTACAtcagaaatatgatcatataccTGGACCTCCAAGAGACAATTTTCTGTTCGGACATTCACCATCTCTTACTAAATCGATGTATGCCGACGACAGCCTTATACATGACTTGTTTCTTCAATGGGCAGAAAAATATGGCCCAGTTTACAGAATCAACAGTTTGCATTATATCGCAATAGTGGTTCACTGCCCTGAGGCTACGAAGACAATCTTGATGTCACCCAAGTATACCAAGGATCCATTTGTCTACAGACGCCTATTTAACTTGTTTGGGAAAAGGTTCTTGGGATATGGGCTAATTACAGCTGTGGACCATGACATCTGGTACAGGCAGCGTCGCATCATGGATCCAGCCTTCAGCAGCTCATACTTACGAAGCTTGATAAGCACTTTTGACGAGATGTCAGAACGCCTGATGGACAAGCTGGAGGAAATGGCCAACAACAAAACCCCTGCCGTCATGCACGACCTGGTCAACTGTGTTACACTTGATGTCATTTGCAAGGTGGCTTTTGGTGTTGATTTAAACTTCTTGGCGCAAAAGGATAGTCCCTTCCAGAACGCAGTAGAGCTTTGTTTAAATGGCATGACCGTAGATCTCAGGGACCCATTTTTTAGGCTTTTTCCCAAAAATTGGAAGCTTATACACCAAATCAGAGATGCAGCTGAACTCTTGCGTAAAACGGGagagaaatggatacaaaacAGGAAGACAGCAGTGAAAAATGGAGAGGACGTCCCCAAAGACATTCTCACACAAATCCTCAAATCAGCAGAGGAAGAAAATGTTAATAACACAGATGATCTTGAGCAGATGTTGGACAATTTTGTGACTTTCTTTATAGCTGGCCAAgagacaacagccaatcagctcTCATTTGCAATCATGGCATTAGGGAGAAATCCAGAGATATACAAGCGAGCTAAAGCAGAGGTGGATGAAGTCCTCGGAACCAAAAGAGAAATTTCAAATGAAGACCTTGGAAAGTTTACTTACTTGTCTCAGGTGTTAAAGGAAACCCTGCGTCTGTACCCCACTGCGCCAGGAACCAATCGCTGGCTTCATGAGGACATGGTCATAAACGGCATTAAAATCCCTGGAGGCTGTTCTGTTATGTTCAGCTCGTATGTCTCCCAAAGACTGGAAAAGTTTTTCAAAGATCCGTTGAAGTTTGATCCAGAGAGGTTTGATGTGAATGCCCCAAAGCCTTATTACTGCTACTTCCCATTTGCACTTGGTCCACGAACCTGTCTAGGGCAGGTCTTCTCACAGATGGAGGCAAAAGTTGTGCTTGCCAAACTGCTCCAGAGATTTGAGTTCAGTCTGGTCCCTGGACAGTCTTTCGACATTAAAGACACGGGAACTCTACGGCCCAAGAGCGGAGTGATCTGCAACATCAAGCAGTGCTCATAGGACATGTTTAAATCTCTAATGACAGCTCTTCTGAAATAAATCCTCTTATATTAGCCAAACATTAATCAGAGAACAGAAGTTGAGCAATCACCGATTATGATCCATCAATTGATTACAATGAAAATACATTAACTCACagtacattaattaatattaagtGTGCTTCACAGTATTCACTGCATTAAATGTGCTTCACACTGGTGAGTGgtctgacaaaccacctgtagaaacataTCATCTCTTTCTcattaatcaaaacaataaacattCCCACTCCTTACTCTAGC

Function

GO:

id name namespace
GO:0006707 cholesterol catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0033781 cholesterol 24-hydroxylase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1224 Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Predicted to be involved in cholesterol catabolic process. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CYP46A1 (cytochrome P450 family 46 subfamily A member 1).

Ensembl:

ensembl_id ENSDART00000099258

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036793 lncRNA downstream 186085 5068812 ~ 5070190 (-) True XLOC_017876
TCONS_00035284 lncRNA downstream 489626 4759477 ~ 4766649 (-) True XLOC_017871
TCONS_00035283 lncRNA downstream 499283 4753582 ~ 4756992 (-) False XLOC_017871
TCONS_00036792 lncRNA downstream 760133 4495141 ~ 4496142 (-) True XLOC_017869
TCONS_00036446 lncRNA downstream 869968 4381929 ~ 4386307 (-) True XLOC_017867
TCONS_00035302 lncRNA upstream 744851 6012451 ~ 6023109 (-) True XLOC_017887
TCONS_00035303 lncRNA upstream 760601 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00035305 lncRNA upstream 766185 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00035304 lncRNA upstream 766185 6033785 ~ 6035070 (-) True XLOC_017888
TCONS_00035311 lncRNA upstream 899695 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00035293 mRNA downstream 1665 5237286 ~ 5254610 (-) True XLOC_017878
TCONS_00035292 mRNA downstream 27118 5158419 ~ 5229157 (-) True XLOC_017877
TCONS_00035289 mRNA downstream 203437 4897996 ~ 5052838 (-) False XLOC_017874
TCONS_00035288 mRNA downstream 203437 4897996 ~ 5052838 (-) False XLOC_017874
TCONS_00035290 mRNA downstream 203489 4898055 ~ 5052786 (-) True XLOC_017874
TCONS_00035295 mRNA upstream 5055 5272655 ~ 5291012 (-) True XLOC_017880
TCONS_00035296 mRNA upstream 34586 5302186 ~ 5328637 (-) True XLOC_017881
TCONS_00035298 mRNA upstream 62940 5330540 ~ 5369105 (-) True XLOC_017883
TCONS_00035299 mRNA upstream 111241 5378841 ~ 5400395 (-) True XLOC_017884
TCONS_00035307 mRNA upstream 821907 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035291 other downstream 348798 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035282 other downstream 489789 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035279 other downstream 518466 4734614 ~ 4737809 (-) True XLOC_017870
TCONS_00035271 other downstream 1130021 4126140 ~ 4126254 (-) True XLOC_017864
TCONS_00035262 other downstream 1921517 3334542 ~ 3334758 (-) True XLOC_017854
TCONS_00035297 other upstream 53615 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035300 other upstream 346279 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035301 other upstream 727989 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035315 other upstream 1314199 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 1542021 6809621 ~ 6812680 (-) True XLOC_017897

Expression Profile

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