RNA id: TCONS_00035288


Basic Information

Item Value
RNA id TCONS_00035288
length 8905
RNA type mRNA
GC content 0.52
exon number 21
gene id XLOC_017874
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 4897996 ~ 5052838 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacagacctccCTGAATAATTAGTTTTTCCACTTTATGGGGGGGGGGTCCCTTTGGTCCAAACACTGGTCCAACAGTCACATGAACTCTCTTATGTTTAATAAAGATGAGATTGATTCAAATGTGATGTGAGGAAATCCAAAATTGTTAACCGGCCGCGCCGTGTTTTCCAGCAGACTCTGCGCAGAGAGCTGGAGGAGATGCTCGATAATGCCATGCTGGAGCAAAGGGGCTCCGGCAGGGGTCTTATACGCACATTTGTACACGCTCACATTTGCCTCTGTGGGAATGGGGAAGTTTGATATTAGAAATAAACTTTCCACTTTGCGAAAATGCGTTGAAGTCTCCGCTCGCCTCAGAGCAGTACCAGTTAAACGCATATTGGTGTCATTTGTCTTCGTCTCAAACGCATCAGTAATTGTTTTCACAGCTCGTGCCCAGCACACATTCACCCACTGACAGGACAGCGGTGGCGAACGCTCCATCCTCAAATCGCAAGCCCACATATATATAGCTATACCGGCGTGAATGAGGAGAAAACTGTGCGATATGGGGCAGACGATGGCACAGCGCTACCCCAATGAATAATGTAGATGGGCATCAGCAGCGTGCGGCTATAGAGTCTGCGAAAACACAGACGCTGGGGGAAATAAACCTACAGACTTTAATGCTCGTTTAAACGCGACTTCGAGTATGGAAACGGGTCTGGTCGCGAATCATCAAGTGAAAAATGTTGGACGCGGAGATCCCCCTCCTTCGCCTCATCATCGCACACCTCCACAGCAACAGTCGCGAGCATTCCATCAGCAGCACCAGCAGCGAGCCgcgcacaacaacaacaacatctccATCACCATCCACAGCAGCAGCAACCGCGCAGATCCGCAGCATGGAGGAAAAGAAGACGCTCTGGAGGCGCAGGTCGATCGCCATCCGCGTTTGCTGAACACAGGCGACGAGGAGGATCGCTCGTCCAAAACCGGGGGGGATCGAATGGGCAGCAGGTACGAGCACTCCAACTTTGGACCAGCgagcaacaataacaacaacaacaacagcggcGGCGGCGGAGGCAGCGCGTCCCAAAGCGGGAGCAGCTCAGTTTCTGAGTTTAATAATTATTACGGGAATGGAAGAGGAGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCTAGGACGGCTTTAATACATCAGGCACCGGGCAACATGGATCAAGTGCAGAACTCCCACGAAGGGTACCATAATAATCCGTACAACCACTATCCCAACTACCGGCCGGGGTACGGCGGCGCTGGATACGGTATGATGAGCCCGTCGCGGCAGGGGAACATGATGGGCCCAGGTACCAATTCGCCTACCGCTGCTGCTGCTAGCCATGGCAAGGCTGCTATGGCCTCGACCACCCCGGCTCCTGGTGCCAATGTTGGGAGCTTTCAGAGGTTTCCCGGACAAAACCAACAGCACCCTTCTGGAGCTACACCCACCCTGAACCAGCTCCTGACATCCCCGAGTCCGATGATGCGGGGATACGGTGGCGGCTATCAAGATTACAGCAACCCGCCATCGCAGCAGCAGCAGTCGGGTATGGGTTTGGGCAAAGACATGAGCTCCCCGTACAGCCCAGCTGCCAGCCACAGCTGGGCAGCACAACAAAGAAACCACCCGGCAATGAGCCCCGGGAACAACGGCAACAGCAGAGCCCAGGTGGCAACTATGGACCCTATGACCATGAAGCGTTCTCAGATGTATGGGATGGGCAACAATCCCTATTCCCAGCAAGGAACTTATGCCGGACAGCCATACGGATCACCCACTGCTCACCGATATCCAATGGGAATGCAGGGCCGTGGGCAAGTTGGCATCGGAGGAATGCAGTACTCTCAGCAACAGCAGATGCCAGCTCAGTATGGGCCACAAGGAATGAGTGGCTACTGTCAGCAGGGGCAGCCTCCGTATTTCAGCCCTCCACAACAGCAGTCCGCAGCCCCCTCTCAACCCCCCTACATGCAGCAGCGAGCTCCAACACAACAGGACACACTGCAGGAGGGATATGGCAGCAGGGGACAGTCTGGAAAACCAAACCACGATGACATGGGTCTTACTCAGCAGGACCGCCCGTCTAGCCTCCCGGATCTCTCTGGCTCTATTGACGACCTCCCCACGGGAACAGAAGCAGGTCTCAGTTCAGCCGTCAGCGCTTCAGGCTCTACCAGCAGTCAAGGCGAGCAGAGTAACCCCGCTCAGTCCCCCTTCTCCCCCCACGCCTCACCCAGAGTTCCCAGCATGCGCAGCGGACCCTCGCCCTCCCCAGTTGGATCTCCTGTGGGTTCCAGCCAGTCCCGATCTGGGCCCATATCACCTGCCAGTGGGCCAGgcacacagaTGGCCCCTCAGACCCCAGGGAATGTTCCAGACGTGGGCTCCCATTCCACTCACAGTCAGTCGCCTATGTCTCAGGAGAGAGGATATGCATCAAACATGCAGCGCAATGCACCTGGTTCCCAGTTTGGAGGTCAGCAGCCTGGACCTTCTATGTCTCCACACTCCTGTCCGACTGGCCCTATGCACCACAGTGTGGGTTCCTATCAGATGGGCCCTTCTTACGGGCCTCAGAGTGGCCAGTATGGTCCTTCAGGTAACTACCCGCGTCCTGCTAATTATGGCGGTGCACCGGGTGCCAACTACAGTGGCCCTGGTCCAGGCATGGGCAACAGTCTCGGCATGAATGCCAGCAGTCCAATGCATGGCCAGGGTCCAGGGCAACCCTGTGGCTCTATGACGACAGCTCGAGGTCCAGGACATGCGGCCGGTGGCAGGCCGTACCCAGCGGGCTCCAGCAGTGTTGCTCCAACCTCTCCCAACATGCCTCAGTCTGCTGGCCCTGGGATGGGTCCACCTCCACCCAACGTTGGCCGCAAACCCCACGAGAGTGGTCCTGCATCTGCCCAGCAGAACCTCGTCCCCTCGAGCCAGGCCAGGCCAGCCGGGTATCAAGGTGGCTCCCACATGCTTGGAATGGGTCCCGGAGGGCCTTACAGCCTTCCACCAAGCAATAGCTCTGCCAGGATGACCCCTCAAGGTCCCTCTTACAACACAATGCCCACAGGGCCCATGACAGGCTCAGGGGACACCATGATGCCCACCGATCCCAAACAGAGAGCTGAGCACAAGGAGGAGGGCAGCACACCCGCCACAGAGCCCCCTAAGCCAAAGGACAACTACGGTTCTCAGTGTGTGTCCCAGCCTCCAACCCCGTCCCCTCTGTCCCCTAGCCCAGCTAGTCTGTCCTCTTATCAGGGGGACGACAGCGATAGCATTAGCAGCCCTGCCTGGCCAAAGAACCCCAGCAGCCCTAAGCACAGCACAGTGAACATGACGAATGAGAAGATAACGCGGCTGTACGACATGGGCTGTGAGCCTGAGAGGAGGGCATGGGTGGACCGCTACATCGCCTTTATGGAGGAGAGGGGCACGCCGGTCCCTAACCTGCCTTCAGTGGGCAAGAAGCCGCTGGATCTGTGCCGCCTCTACCTCTGCGTTCGTGAAATCGGAGGCTTGGCTATGGTAAATAAGAACAAGAAATGGAGAGAGCTGTCCACCCACTTGAATGTGGGGACGTCCAGCAGCTCGGCCAGCTCCCTTAAGAAACAGTATATCCAATACCTGTTTGCCTACGAGTGCAAGGTGGAGCGCGGAGAAGAACCTCCACCTGATGCGTTCGCTATGGGCGATGGCAAGAAGCAGCAACAGCAAGCCAAGATCCAGCCACCATCGCCTgCAAACTCAGGCTCTCTTCAGGGGCCGCAGACTCCTCAATCTACAGGCAGCAGCACCATGACAGAAATGCCAGGGGACCTGAAGCCGCCAACACCCGCTACCACACCGCACGGACAAGTCACCCCTCAGCCTGCCGTCAGAAACAGTGGTATTAGTGTGCAAGATCCGTTCTCAGAAGGCAGTGACCCAGCCTTTCAGAAGCGAGGTCCCATGCATGGAGGCAGCGGAGATGCTACCTCTAGAATGCAGTTTGACACTAGTAAGGATCCCTTCGGAGCCGCTAGGAAAGGTGGCTCTGAGTCCTTCGTGCCAGGACAGATGCCAGGTAGTGGCATGCAGGAAATGTATTCCCGTGGGCCGTCCTCAGGGATGGGAATGGGCCCACGACCCCAGTACTCTTACAACCCTGGTTTTGAAAGGAGGCCAGACCATGTCATGGGTCCAGAGGGGGGAATTGCAGCTTCTGGAAATCAGAACAACATGGTGCCTTCCAGCAGCGATCCCAGCATGTTCTCAGGCAGTAGATACGCCTCTCATCAGAGcAGACACGGCCATGATGGATATGGGCAGCAGTACCCGCACAGCATGCCATACGGTGCACATGGGATGTATCCGCAACAGCAGGGTTATAAGCGGCCTGGAGAAGGGATGTACGGTCCTCCTGCTAAGCGGCACGAGAGTGAAGCCTATGGTATGCAGTACGGTGGTCAGCAGCCTGATATGTACAGCCAATATGGTTACCCAGAGCGTAGGCCCATGCAGAGCCCATTCCCTTATGGGTACGGCCGAGATCGCATGCAGCCAGGTGGGCAGGGACCTCCTCAGCACAGCATGATGAGCGGTGGACCACCCCCATCCTCCAACTCCAGCGGCGGGCCTCAGGGGAACATGTGGCACACTAGGCACGACATGGCATACCCTTACCCCACCCGACAGAGTCATGGCCCTCCATACCCCTCAATGAGCCGTGGGGATGATCCGGAAGCCAGGGTCAGTCAGGAAAGTCAGTGGCCCGGTCAGCGCCAATCTCCCTACCCGTCACACTCTTCGTCCTCTTCCAGCTCCATGCCCCCCATGGCTAGCCGGCAACCACCTTCTTCCTACCAATCTCCTCCAGCAATGCCAAACCATATATCTCGAGTTCCAAGCCCCGCACCTTTCCCTCGCTCTGTGGGTGGCTCTATGTCACCTACCAAGGCTCATATGATGGCGTCTCTGAAGCAGATGCAGAAGCCAGGGGGCCCAGTGTCCATGCCAAGCTCTCAAAGTGGTGGTCTTCCTGGGCAAGGCTTCTCATCAATCCATAGGGAAGTCAATTACCctctggactctgtggaggccacACAACCCCAGCTTAAACCTCGCCGAAGGTTAACGTCAAAAGACATTGGCACACCAGAGGCTTGGCGTGTGATGATGTCCCTTAAGTCTGGCTTGCTTGCCGAGAGCACATGGGCCCTAGATaccataaatattttattatatgatgACAACACAGTCTCTTCTTTTGGTCTGTCTCAGCTGCCTGGTTTCTTGGAGCTCATTGTTGAATTTTTCAGAAGGTGTTTAATAGAGATCTTTGGGATCCTTGAGGAATATGAAGTTGGAACAGAGGGTCAGAAAACTCTTCTTGGTTCATGTTCAGAACCTACAGAAAAACAGCAACCTTCCACTCCAGACTTCAAAAGCCAATCCATTGCGGAACATGTGGAGAAGCGATTAGACGTGGAGCCTGAGAAACCTCAGCCCAGCAGCTCAGCAGCAGCACTCGTCATGGAGAAAAAAGAAGAGTCAGCAGAGGATAAGGCAGATGACGAGGAAAAGAACACTGGTAAAGATCCATGTCCTCCTGTGGAGCCCAGACCCAAGCAGGCCAGTAAGTATGACAGGCTTCCAGTGAAAATCGAAGAGAAAGACGCTGAGGAGGATTGTGTGGAGGATCGATCAGAGCTGCTAGGTCTTGCCGGGGAGTTCAAAAGTGGTCTGCTGCACTGGAAGGCAGGCGGCGGGGACTCCACTGCCCATATCCAGACCTATTTCGAGAGAAGCTGGGAAGAGGAACAGCCTCTCGAGAATCAGGAAGGTGTGCAAGCTATTGGAAAAGAAACGGTTGAAGAGCAGCCCAGAGGGCAAGAGGAGCTGAAAAGAGAACTCCCAGGGCCTTCAGAGGAAAACTTGACAGCCACTGTAGATGATGTGCTAAAATCAAATCCAGGGTCCATATCTGAAGGTGAATCTCAGACATTCCCCTTCCGCACCAGGGAGAACAAGAGCAGCATTACTTTGCTGGAAGATGAGCCGCGGTGCTGGGATGAAGCACCTCTTTCTGTAGCTGAAAGCTGGCAGGATGAGTTGGCCAAGCGCTGCATCTGCGTGTCCAATATCATCCGCGGACTCTCCTTTGTCCCAGGCAATGACAATGAATTGGCTCGGCACCCAGGTTTAGTGCTCATTCTTGGCAAACTTGTGCTTCTGCACCACGAACACCCTAAAAGAAAAAGGATGCCAGCTACTTACCAGCGAGAAGAAGAGCGAGGTCTGGCTTGCAGCAAAGACGAATGGTGGTGGGACTGCCTTGGTGCCTTGCGTGAAAACACCTTGGTCACCCTTGCAAACATTTCGGGACAGCTAGATCTGTCCGTTTATCCAGAAAGTATCTGCCTTCCCATTCTGGATGGGCTGCTCCACTGGATGGTGTGCCCTTCAGCAGAAGCCCAGGACCCCTTTTGCACGGCAAATGGCTTCTCGTCCCTCACACCGCAGAGGCTGGTGCTGGAGTGCCTGTGCAAACTGAGCATCCAAGACTCGAACGTTGACCTCCTGCTGGCCACACCGCCCTTCGGCAGACAGGAGCGCCTCTTTGCCACTTTAGTGCGGCATGTTGGTGATCGAAAGAGTCAGGTGTGTCGTGAGATGGCTGTAGCCGTTCTCTCTAACCTTGCACAAGGTGACCCAACAGCTGCCCGAGCTGTTGCCCTGCAGAAGGGCAGCGTCGGAGCCTTGATAAGTTTCCTAGAGGACAGCGTTGCAATGGCGCAGTATCAGCAAAGCCCTCATAGCCTCTTGCACATGGGACACTCTACCCAACATGAGCCGCCCAGTATCAACATGATGTGCCGGGCCGCCAAAGCCCTGCTGGCCATGGCCAAAGTGGAAGAGAACAGGCCCGAGTTTGTCCTCTTCGAGAGCAGGCTTCTTGATATCTCGCTGTCCTCCGTGCTGAACTCTGGAGTGGCGGCCATCTTGTGTGAGGTACTCTTCAAGCTCGGCCGCTCGTGACACGCACAAAAGAGCGGGAGCCTATAGTGCCATCACGGGAACGCACGGCTGAGCTGAGCCACAGAGATCACACAGAACTGTCggtgttatatttttatttaaggaaaagaacacaaacaaacaaaaaaaagtttttacataCAAATGAATATATAGAGAATATATATAGCTCCTCTGCCCCATTTCCCAGTTTTCATTTgggatttttaaatgattttaatacaGATATTTAATACTTGGTCTTTTCgttttttttctattctttttttttattattattttcgttTCGTTGCGTCTGTGTATTTTCTTTCGTTTGTTTTAACCAAAGTTGGCATCCGATAGAGTTAGATTTTAAGAGTATTTTGCTCTCAAAATGTTTTGAtgcagtgttttgtttgttttctcgtGGGACTTTGTTTATTCGGGGAAtgcagatttatttaaatttgtgagACATGTTGTAGATAGAACTTCTCTTGCAATGTGTTGCGACATAagaaaaaaacgaaacaaaaaacaaagaaaaaaaaaacacactgattTTAAGACATACATGTATAcagctctgaaaaaaaaaaagcattgtgcAATAGATTTAGCTGGCTCAGAGGGGAGATGATGATGAAATGTGAATGACCACAGGCAATGTTCTGATCTGACCACCAGTGTTGCACTGTTTCACCACACCAGTATCTGAGGGTCAAGCGAGCGTCAGTTTCAAACCGACTTGCTTCCATATTAGTGCCGCCATATAGAGAGTCCCTCTCTCTGACGGTGAACTCAAAAGTGCTTCGGTTACCCCTCTATTCTATATCCACGGGTCGATTTGTATATAGGAACTGTACATTATATGGGCCccttttcacaattttttttttcctccaagaGATGTGGTATTATACAAAGTGAGTAGTTAATGCTACGCGCCATTGACATTTTGCAGATGTAAAGTCACTGTTTCAGGTGAGGAAAGTCTTCAAACGTGTAAGGGGGCGTTCATACAGGGGCGTTTTTGCATTTGatctaagcttattttttttaattgttggaCATATTTAGTTGATGTGCTGCACATTGCTGTTTTCAGCATCTTTTAGTTAAGTATTTTTAAACTCTTCCCAGCAGATCAGTGTCAGTTTTACGATGGACCAGATGAATTCGGCTGCTGGAAAAGCATCTACTGAATTGAGCATGTACATTAGCGATTGCATACGGGGGTAATGACATGCCTGTAAATGCACTTGTTCAGTTGCTGTTTGTAATACACGAACGCATCCTTTGTGAATGCCTCCGAAGACTTTCCTGTGGAGTTCTGTGTGACAGAGATGGCAATGGCTCCCTCTAATGGCCTTAGATTTCGGAAATTACAGGCTGAACAGATGGCATAAATGTAATTCAATGTGAAAGTTACCCCAAAAATGACTTAACGATTttaacaagaagaaaaaatatgtacAACTCTTTATGTAAGCTCTTTTTGCTCCATATGATTTGATGACCATTGTTTATTCAGTATAAAGTCTTTATACATGTTCCACATGTTAAAAGTAAATGTACATGAAATTTGGTCGAGCACTGTGAACGTTGttcttcagtgttgtgttatttttgtgtgtgcgtgtgtgtgtgtgtgccaagaGTGACTAAAGAAGGTACCAAACCATAAATAGCATTAATATTGTaatcttttgttttaaaaaacgCAATTCACTAGCAGTTAACTAAAGTTTTCTTGGAAATCGGCTCATTTTACACATCCTCTAGagctggggtgcccaaactctgacCTGGTGTCCAGCatgttttagttccaaccccaattaaacacacctgaatcagcta

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071565 nBAF complex cellular_component
GO:0016514 SWI/SNF complex cellular_component
GO:0035060 brahma complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4459 Predicted to enable DNA binding activity. Predicted to contribute to nucleosome binding activity. Predicted to be involved in ATP-dependent chromatin remodeling; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex and nBAF complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome; Coffin-Siris syndrome 1; intellectual disability; lung non-small cell carcinoma; and neuroblastoma. Orthologous to human ARID1B (AT-rich interaction domain 1B).

Ensembl:

ensembl_id ENSDART00000164274

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035284 lncRNA downstream 131347 4759477 ~ 4766649 (-) True XLOC_017871
TCONS_00035283 lncRNA downstream 141004 4753582 ~ 4756992 (-) False XLOC_017871
TCONS_00036792 lncRNA downstream 401854 4495141 ~ 4496142 (-) True XLOC_017869
TCONS_00036446 lncRNA downstream 511689 4381929 ~ 4386307 (-) True XLOC_017867
TCONS_00036791 lncRNA downstream 751864 4135534 ~ 4146132 (-) True XLOC_017865
TCONS_00036793 lncRNA upstream 15974 5068812 ~ 5070190 (-) True XLOC_017876
TCONS_00035302 lncRNA upstream 959613 6012451 ~ 6023109 (-) True XLOC_017887
TCONS_00035303 lncRNA upstream 975363 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00035305 lncRNA upstream 980947 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00035304 lncRNA upstream 980947 6033785 ~ 6035070 (-) True XLOC_017888
TCONS_00035286 mRNA downstream 14323 4827735 ~ 4883673 (-) False XLOC_017873
TCONS_00035287 mRNA downstream 14323 4827939 ~ 4883673 (-) True XLOC_017873
TCONS_00035285 mRNA downstream 104546 4769762 ~ 4793450 (-) True XLOC_017872
TCONS_00035281 mRNA downstream 131348 4750209 ~ 4766648 (-) False XLOC_017871
TCONS_00035280 mRNA downstream 131351 4742400 ~ 4766645 (-) False XLOC_017871
TCONS_00035292 mRNA upstream 105581 5158419 ~ 5229157 (-) True XLOC_017877
TCONS_00035293 mRNA upstream 184448 5237286 ~ 5254610 (-) True XLOC_017878
TCONS_00035294 mRNA upstream 203437 5256275 ~ 5267600 (-) True XLOC_017879
TCONS_00035295 mRNA upstream 219817 5272655 ~ 5291012 (-) True XLOC_017880
TCONS_00035296 mRNA upstream 249348 5302186 ~ 5328637 (-) True XLOC_017881
TCONS_00035282 other downstream 131510 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035279 other downstream 160187 4734614 ~ 4737809 (-) True XLOC_017870
TCONS_00035271 other downstream 771742 4126140 ~ 4126254 (-) True XLOC_017864
TCONS_00035262 other downstream 1563238 3334542 ~ 3334758 (-) True XLOC_017854
TCONS_00035261 other downstream 1564205 3333576 ~ 3333791 (-) True XLOC_017853
TCONS_00035297 other upstream 268377 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035300 other upstream 561041 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035301 other upstream 942751 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035315 other upstream 1528961 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 1756783 6809621 ~ 6812680 (-) True XLOC_017897

Expression Profile

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