RNA id: TCONS_00036447


Basic Information

Item Value
RNA id TCONS_00036447
length 308
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_017894
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6478510 ~ 6480513 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGGACCAaacttccagcctgatctcacgagataacTTGCAGAATTGGGGATGTGTCGGCTTCTGCAGTGTGGACAGTGAGACCTATATTGAAAACACTGAGTCAGGCATCGCTGGCAGATTCTGGAAAGTACAGAGAAAAATGAATGCaagtaaaagaataaaaaataagcttTCATAACACAAAGACGTTCATGTGGTAACAAGAGTGGTTATCTTGGTCTACTCAACATGTGATGGAATTTCCCTTAAGAAATTGCTTTCGCTTTTAGTTGCCCGTAAGTGTTTCGATTGTTTATCAGAaatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036794 lncRNA downstream 263753 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035311 lncRNA downstream 306515 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00035303 lncRNA downstream 443440 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00035305 lncRNA downstream 443440 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00035304 lncRNA downstream 443440 6033785 ~ 6035070 (-) True XLOC_017888
TCONS_00036448 lncRNA upstream 657550 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036795 lncRNA upstream 711370 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036796 lncRNA upstream 1131642 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036797 lncRNA upstream 1471269 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00035342 lncRNA upstream 1642180 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035313 mRNA downstream 1805 6308564 ~ 6476705 (-) True XLOC_017893
TCONS_00035312 mRNA downstream 199693 6241855 ~ 6278817 (-) True XLOC_017892
TCONS_00035310 mRNA downstream 281521 6166528 ~ 6196989 (-) False XLOC_017890
TCONS_00035309 mRNA downstream 294343 6163932 ~ 6184167 (-) False XLOC_017890
TCONS_00035307 mRNA downstream 346686 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035314 mRNA upstream 36010 6516523 ~ 6532462 (-) True XLOC_017895
TCONS_00035316 mRNA upstream 328261 6808774 ~ 6812688 (-) False XLOC_017897
TCONS_00035318 mRNA upstream 414373 6894886 ~ 6936488 (-) False XLOC_017898
TCONS_00035319 mRNA upstream 414373 6894886 ~ 7000225 (-) True XLOC_017898
TCONS_00035320 mRNA upstream 572357 7052870 ~ 7069612 (-) True XLOC_017899
TCONS_00035301 other downstream 482807 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 864514 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035297 other downstream 1157181 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035291 other downstream 1571033 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035282 other downstream 1712024 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035315 other upstream 101286 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 329108 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035322 other upstream 590127 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035333 other upstream 1131769 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 1506437 7986950 ~ 7994084 (-) True XLOC_017910