RNA id: TCONS_00036796


Basic Information

Item Value
RNA id TCONS_00036796
length 713
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_017907
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7612155 ~ 7638652 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAACCCTTCCTAGCATCAACAGACTCACTTTCAGTGGATTTAAAGGTTCTGTTCCTGGACATGACAAAGTGCACAGTCTACAAGGTTAAAGAGAAGAAACAGAATCTCTGGTGCAAAAGCAGCCAGCAATTCGCTCTCATCACTTCATCAAGCCAAGAGCGAGAGAAAAAGATGATGACACGAGGAGGAGACCATCTCCATTTACATCTGGCTGAACATCAGGtgcagctgtggctggtgtattctgggcaATTTTCTTACTCCTTGATTTCGAGTgtgatcctgaaaaatcttcgtttgaaggggtgtataccccttgcccttagccctacgctcAAGCTTaaaagaaatgggacaccactaccccttcacagGCACACACAAAACGAGGggaaaggggaagggctaaggggtaaaattgggattGAACCTCGGTGTCCACAACTCACTAATTATCTAACAAAACGAATACTACTTTAAATAGTTGCACTATAAAAACctgtatatttgttatattttacatACCCTTTGATGTCTTAATTATTCAATGTAGCCTATATAATAAATCTGTAAGCTAGAAGGATGACTTCTGACTGCTGTCTGCCTGCGAATTTATCCCAGAATCAGTAATATGACGCCTAGTTTGGAGGGGTTTGAGTAAATAAACAATTACCTATAAATAGATTACTTTGAAGCAGATATCAGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036795 lncRNA downstream 400959 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036448 lncRNA downstream 473013 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 1131642 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036794 lncRNA downstream 1397398 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035311 lncRNA downstream 1440160 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00036797 lncRNA upstream 313130 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00035342 lncRNA upstream 484041 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035348 lncRNA upstream 1155850 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 2438505 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 2475376 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035331 mRNA downstream 28669 7478104 ~ 7583486 (-) False XLOC_017906
TCONS_00035330 mRNA downstream 29219 7443224 ~ 7582936 (-) False XLOC_017906
TCONS_00035332 mRNA downstream 65075 7543597 ~ 7547080 (-) True XLOC_017906
TCONS_00035329 mRNA downstream 318318 7262434 ~ 7293837 (-) True XLOC_017905
TCONS_00035327 mRNA downstream 435345 7149100 ~ 7176810 (-) False XLOC_017903
TCONS_00035334 mRNA upstream 8110 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035335 mRNA upstream 325704 7964356 ~ 8024582 (-) False XLOC_017910
TCONS_00035336 mRNA upstream 326563 7965215 ~ 7992496 (-) False XLOC_017910
TCONS_00035338 mRNA upstream 443057 8081709 ~ 8094718 (-) True XLOC_017911
TCONS_00035339 mRNA upstream 462418 8101070 ~ 8110672 (-) True XLOC_017912
TCONS_00035322 other downstream 540544 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 799475 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 1028485 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035301 other downstream 1616452 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 1998159 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035337 other upstream 348298 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035340 other upstream 484041 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035349 other upstream 1298251 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 2005413 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 2113879 9752531 ~ 9760424 (-) False XLOC_017923

Expression Profile

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