RNA id: TCONS_00035339


Basic Information

Item Value
RNA id TCONS_00035339
length 3071
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_017912
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 8101070 ~ 8110672 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGGCCAATGGGCGAGTTCTCACTCTGTGTGCTATTTATCCTGAAACAACTGCGACACAACACCATTTCAGTTGTACATGCTGAATCTTTTCTAATCGTTAAGGAATAACTCAATGGATTATTAGTTTATGAGGCGTTGAGAAGAGAGAAATATGTTCTTTTAACAAACTGCGGGAAGATTTTGTCTCACAATGATGGAACAGGATGAATCAGCAAGGTTTGGGGGAGAAAATGGTCTGAAGATCCATCCTAAACCTGTCATCCCAGAAAAACCTAAAGGCATCCCACCTCCATCAAAAGTCAGCAATCCATTTGTCTCCTCCCTCAATGCTGCTGTGAGAAAAGGGGAGATTCTCGCACCACGTGTAGTCTTTAAAGATGACAAAAATCTCAGTCGCCAGCTCTCCCCACCTTGGGGATCAAAACCCAGTGACAACCAGTTCGTCAATAACACCGAACTGCTGGATAATAACCAAAAGAAGGAGGTTGATGCTATTAAACAGAATCTCAAAGACAAGAATCCCCCACTGGTTTCACCAATGTCTCCAAAAATAGATGAAACCTCAGAGCCTGAATGTAGTCCACGCACACCTGTGTCCGCTATACCAGCCAAATGGTCAACACCTAAGAAGTTTGTATTTAACCCCCCAAAAACTAGCAAAGTTGAAATCAACCAAACAGAACATACGAGGGGGGTTGAAGTTGCCAAGAAGTCTATGAAGGACAGAAATTTTCCATTGGTTCTGCCAATGGCTCCGAAAAAAATTGAAACTTCAGAACCTGAACCCAGCATATTTACACATGTGTCTGTTCCACCATCCACACCCAAGAGCTCTGTTATTATCCCTCAAACAGCCAGTAAAGTTGTCAATGAGAATGCAGATGTCACAAAAGAGTTCAATGTTGCAAAAAAGTCTATAAAGGAAAGGAATCTTCcacttgttttgccaacaaaAGCTGAAACCCCAGAGCCTGGAAGCAACCCCAATACACCAATGGCCATTTCACCAATCAAAGTATCTACACCCAAGAGTTTTGTATTTAACACTCCAAAAACTAGCAATGAGAAGTCAGGAACAGTGGAAAGTTCAATTAAAGTGGAAAGCCCAATTCCAGCAAGTCGTACTCCTGCTTCGCATCCCCCAACTTTTACTGCCCCATCGGTTGCAGCATTTCCCCCCACTGAAAGTGTTCCAGTTGTCCCTAAGGCTGTTGTTCCTTCTCAGACTTCAGTTGTAGCACCTTCTATCCCCAACACTCCTGCCCCAAGCATTCCAACCCCAAGCATCCCGACCTCTGTTAACCTTGAGCCAAAGATTCTTGAGCCAAAGATTCTAGAACCAAAGATTCTTGAGCCAAAGATTCTTGAGCCAAAGATTCTTGAACCAAAGATTCTTGAGCCAAAGATTCTTGAACCAAAGATTCTTGAACCAAAGATTCTTGAACCAAATATTTCTGAGTCAAAGATTCTTCAGTCAAAGATTTCTGAGCCAGCCATTACAACACCAGTCATTCCTGATCAAACTGTCCCTAAGACTTCTAAACCAGATCCATCTTTTACAACTCTTTCTGACACCAAACCTCtaaaacctattttaaaaatgctcaatTTGTCAGAAGTATTTCCTCCCCCTGAAGGAAGCCCTCCTGCAGAATTCACTGATATTCCTCCCCCTCTTCTTGAAGATTATCCCGAGGGAGACTTATTAGAGCAAATCAAACCCACTCCAGCAATCCGTACATCTATCCCCCCAATTTCCAGGAGTCCAGATATCTCTAGCTTATCATCTACCCCTGCATTGTCTTCCCCTCCAGTGGTATCTCCAGAAACTTTGGTGAAGCCCTTAGACATTCATACTGTAGTTAAACCTGCAGATGTGGTGCTGGAGAATACAGAAAGTCTCACTGACAATCCTGACAGGATAAAAGAGGAACATCCCTCAACCAAGCCACTTTCACCCCTCTCAGTCTTGGCAAGAGCAGAAGAGATGGCCTCAGTAAAACGGACACCACCTGATAGCCGTATTTTTAACCTTCTGGAACGGGCTAAGAGAAAGTCAACAGCGATTCAGTTGGCTACCACACCTGGGCATACAACCCCAACGGAGACAGTCACGCCTGAGATACCTCTGCCTGAAACTCCCACACCTCTGCCTGAGACTCTCACAACTGAGGTGACACAACCTAAGGTGACTCCACCTGAAAAGGCATTACCACAGCTTGCCACAACTGTAAAAGCACTGCATGAGGAAGCTCCATCAGAAGTCCCTGTTATCCCTAAACTCCCTCCAGTTGACTATGTAGATCATGCAAGGTTTCCACCTAAAGCCCAAATACCTGAACTGGCCAAGGTTAATGGCCTTGATAATAGGGTGTTGACAGTGGTCAAACCAGTACATCCTCCTCCACCACCACCTAGGAAAGCTCTGCCAGCCACACCCATGGTGGACCCTCTATTAGAAAAAACAACTCCATCTCCTGCGCTTCACCTCCAGAGACCGAAAACACCATCTGAACACCTAGAAACACTTGAAGGATCACTACATGACAGCTCATTTGGAGAGATATTTTATGATGCTGAAGAACCTGCCACTCCTGCAGTTTCCACCTTCAGGCCTCCGTCAGTACCATCATCATCCTCTACTCCCAAAAGACCACTTTCAGGTCATGAGGAAGTCCTCCTGAAACAGCACAACCCAAAACCTCAAGTTAAAGAGGTTGTACCTCTGAACATGGAGGATATGGATTATGGGTCTATGAACTCTGGCTCTCCGAACACAGACATTCAAGTTGCTGTGCTTAAGGACTCAATGCAAAAATCACCTGCCTTGTCTCCATCAGGGACCCTTGAAAGAGCTGATAATGTCTTTGACGATCACACAGAAAGTAAAAAAGGcaaaacaataaagaataaaaaacagaaaGGACCTCCAAAGAATCCATACGCTGATACAGCGGCTCAGGTTCAGGAGGCTCCCAAGAAAAGCTTGTTTGCCAGGAAGAACTCTGCAAAAGCAGTAgatgaaaaggaacaaaagaaaaaagacaaacagcGAGAAAAGGAAAAAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000113993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036797 lncRNA downstream 147888 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 462418 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 889874 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036448 lncRNA downstream 961928 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 1620557 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00035342 lncRNA upstream 12021 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035348 lncRNA upstream 683830 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 1966485 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 2003356 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 2237111 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035338 mRNA downstream 6352 8081709 ~ 8094718 (-) True XLOC_017911
TCONS_00035335 mRNA downstream 76488 7964356 ~ 8024582 (-) False XLOC_017910
TCONS_00035336 mRNA downstream 108574 7965215 ~ 7992496 (-) False XLOC_017910
TCONS_00035334 mRNA downstream 452745 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035331 mRNA downstream 517584 7478104 ~ 7583486 (-) False XLOC_017906
TCONS_00035341 mRNA upstream 12031 8122703 ~ 8419057 (-) False XLOC_017913
TCONS_00035343 mRNA upstream 12297 8122969 ~ 8321315 (-) False XLOC_017913
TCONS_00035344 mRNA upstream 12643 8123315 ~ 8321280 (-) False XLOC_017913
TCONS_00035345 mRNA upstream 27643 8138315 ~ 8304271 (-) False XLOC_017913
TCONS_00035346 mRNA upstream 27643 8138315 ~ 8365244 (-) False XLOC_017913
TCONS_00035337 other downstream 106986 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035333 other downstream 471799 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 1029459 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 1288390 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 1517400 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035340 other upstream 12021 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035349 other upstream 826231 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 1533393 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 1641859 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035370 other upstream 1666507 9777179 ~ 9780867 (-) True XLOC_017924

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_02362692_02367269.mRNA True 3580 mRNA 0.42 4 CI01000051 2361767 ~ 2367269 (-)