RNA id: TCONS_00035329


Basic Information

Item Value
RNA id TCONS_00035329
length 4846
RNA type mRNA
GC content 0.41
exon number 16
gene id XLOC_017905
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7262434 ~ 7293837 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgggGTGGAGTCTAAACCTCCCAAGGCTTCCCGAGCTCAGGAAGTCCAAGACAAAGCATTAGTTTAACCTGTTTTCTGTACTCAAGACTCCAATTCAACATTGATATATAAAGTCAGAGGCTGAAGCTCGGCCACGCCCGTACTGTAGACTTCAATGGCATGAGAACTCCACCGCGCCCAGAAGGACTTTATCCGAGCCCGACTGTCAGATACACTCAGTTTATGGTGGAGACCGGACACATCCAACTACTGCAGAtcacatacccacacacacactctcgcttCAGGATGTATGAACGCGCGCACTTCGCTGCCTGTCTGCTTGCTTTGGTGTTGTTTCAGAGGGCTGAGTCTTGTGACCCGAGGCCTGTGCTTGTGCAGGTTCCCAATACGGTGCCCGCAGGTTATTTCATCACTCAAGTGACTCTCAATGGCTGTACGGCCATACCTGTGTCCTTCACATCCAGCGACCCTGACTTCACTGTAAATACAGATGGAAGCATTGTTACACTTCGCTCTTTGGTGATCTCAACAAAGAGGTTCTCTGTTCTGGTGCAGGACAACAGCGGCCTTGACTGGAGGGTGGAGATTATCTTGTCTTGTAAAAATGAGGATTCTCAAAAGTCGGGCAGTGTGGCTCAGAAGCGTGCTAAGAGGAGATGGAGACCGTTGCCTTTCAGCGTTGTTGAGAATGCCAGTCCTCCTTTTCCAAAGGACGTCGAGATGATTGCATCAGATTCATCTGTAAATTACACCGTTCATTATGTGATCAGTGGGCAAGGTGTCACTGAAGAACCCATAGGCCTGTTCCAGCTGGACCAGAAGACTGGGATGGTGAGAGTCACCGGTCCCGTCGATCGTGAAAAGAACCCAGAGTTCAATTTTATAGCTCGTGCGTTTGACCAAAACAACAGAGAGGTTGATCAATTCCTGCCCATCACTGTGATGGTGGAGGATGTGAATGACAATGCCCCTGAATTTACAGGCAATCGTTTCTTTACTGTGGAGGAACGGTGCAGGGCAggtACTCGTGTAGGACAAGTGAACGCCACAGATAGAGATCAACCGAAAACCCCTCATTCCTTGATCAAATATATTCTTCTGAATGCCACCGACATGTTCTCCATTGATCAGTCGACTGGAATAATAACGGCTAAATCCAACACCCTAGACAGAGAGGCTCAGGACAAAGTCTTTGTTGGCGTAGAGATCAGAGATATGGGCGGCGCTCCTAATGGGCTCTTCAATAGAGGAACTGCTGTGATCAGTCTCACGGATGTCAATGATAACCCTCCCACCTTTAAAGAGAAGTTGtacAAGGGCACAATCAAGGAGAACCTAGCAAATGTGCTCGTTACCAGAATCCCAGTGGAGGATAAGGACTTGGTGAACACTCCCAACTGGAAGGCGGTGTATGAGGTCACTAAAGGGAACGAGAATGGAAACTTCAGGATGGAAACAGACCCCAAAACCAACGAGGGGCTTCTATATGTCGTAAAGGGATTGGATTTTGAGAAAACCCCAGTAATGAATCTGGAAGTAACTGCCCGTAATGAGGCTCCTCTGGTCGGAACGGATGCCAAATGGCAGTCGGTGCCACTCCAGCTCAATGTGGAAGATGTAGATGAAGGACCAGAGTTCAACCCTAACATTATGTATCTCAAAGTCAAGGAGAACCTTCCGAATGGGACCGTCATTGGAACCTATAAAGCTCTGGACCCAGAGACCAAGAACAGCAATGGAATAAAgTACTATAAGTTGACTGACCCAGGCAATTGGATCACTGTGGTGGAGAGCACTGGAGAACTGAAAGTAGCCAATACTATAGACAGAGAATCCTCTTTGGTTCATAACGACACCTACAACATCACCATAAAAGCAGTGGATGAGAGCAAGAAGACTGGAAACGGTGTGGTGATTCTCCAGATTGAAGATGTGAACGACAACATACCTGTGATCCAGAGACCTGACCTGAACATGTGTAATAGGGGCGATGCAGTGAGCTCGGTTTTGGTTGAAGCTGTGGACCAGGACAAGCCACCGTACTCCACTCCCTTCATTTTTGAACTCGGAGCAGAGCAAGAAGGGAAGTGGAAACTGAAGGATATTACAGATTCGTCAGTGGTACTTCAGCAGGTGGAGCCGATGCCCAACGGCATGTACACTGTCCCCATCACAGTGAAGGATCTGCAAGGAACTGGAAAGGAGCAGATAGTGAATGTGCGAGTGTGCTCCTGTCAGAGGGAGGACAGTGGCGTGGGGATATGTGGAGCTCGCAGTGCTTCTGTCTCTTTGGGCAATTACGGCATCCTTGCTTTAGTTCTCTCtggcctgctgctgctgctgttatGTCTATTCCTCATCTTCTTCTGCACTACCAAAAGAGACAAGCTGCAAATCACTGATGACACAGGAACGGGAGGAATACTCCTCAAATCCAACACAGAGGCACCTGGGGAAGAAGTGAAAGATGGAACTCTATTGTTGATCCCTACAGCAGATGTAGTCGACGGTTCTTTTCAGAGCGCTGTTACGGAGAGCAAGAACGTGAATACAGCTCCTGGACGATATGGACAGCAGTTTTTCCAGAGCGGCGGAGTTTACAACACCACCACTCAGGAGTTCGGCACAGATCAGTACTACACATCTGGACGCTACGATAACAAGATATATGGCAACGGCACTCTTCAGAAGTTCTCAAATACTGGTACCCTCGACACGTGGAGAACCAACGGGTGCTACTTGGACAGAAAACTGGCTTATTTCGGAGAGCAGGAGGACGGGCGGTACGCAGACGACCTGCTGAAGAACTATGGGAATGAAGGGGTTGGATCTTCTGCAGGATCAGTGGGATGTTGTAGCATCTTGGGTGAACAGGAATCCATGGAGTTTTTGAATACTCTCGGCCCCAAATTCAGACCACTGGCTGACATCTGCTACACCACAAACAAAACCGGAAAGTAAAGCAAGACTGACTGAGATGAGAGAGTACTGTATGATGTTTGCCCGGTCAAagcacattgcaaaaaaaaatgcattcctaatcagtgtttttgttttgttctcctgtaaaaaaaatccttaaaatttgtttaaataccTGAAATTACTTAAGAAGTGGAAAGAGAGTTttctcaatattattatttaaactacTGATTACATTTCTTCCAaggtttaaaatgaatattttgtcatttagagcatccaaaagcaaacaaatatgctattttcttacatttatatttatattttttataaatttttaccaTCATTCTACTAAAAGAATCAGTATTTGATAGTTTAATCATGATTTTAGAACAAATCggttattttaattaacattttatataaaaataaataaataaataaataaataaatgaatgaataaataaaagctcTAATTGAAAAcctatttcatttaaattatggATGAAATGTTATAAAACGGTTCTAACCTTAAACCTGCACAACCCAGtaaattcagagaagcagagaaTTATCAAGTGGTCTATTAATAATTTCCATAtagctgtaaatataaatataaatattattagatGATTCTAAAATTGCTtacaaataaatgctaaaaaaaactatCTGTTAAAAACATCTCCAGATGTTTGTTTCTCCAAATGTTGAGGATGTTTAAACAAGACAAGAGTATGGATTTAAAATATTCCTTTTACAGTTCATGTCTTTCCTGCTGGATTaggagtgtctgtgtgtgtgttaactttTGTAAGTGaagtttttttgagtgtgtgaatgaTGCAGATAAGCTCTTCTAGGATTGTTTGCTCAGCTTTTCCAAGCCTTTTTTCTCACAGAGCTTGGGAAAACAGTTCAAACGTTAGAATAAAGAAGAGACATTTTTTCTCCCCCTAGTCATCTGCAATTGCGTTTTCAGCCGCGTGAAGTATTAACCGAGTCTGCATTTACAAGACCATCATGAAGTTTGCTCGTGGTTATTTTCCTGGGCTCTTCAGCTGCAATAGCACTGACATCACCTTTGTACACTGAACTCTGTTTGGACACTGTTTGGCCATGATGTATTACtggagttttgtttttgtgttattttcatACAACCTTCAGCAGTAGTTGTTCagtgattagattttttttaatttcaatgaACAGAAACCAAATATTTTATATGCAAGTCActttataaatttaaatgaagATGGTGGTGAACGGTGAAATAGTTGGTAAATTGGGAATAAACTACACATAGTACTTTTTGTTTAGTTCACTTTTCACTTTGTTCTGGCAGCacattgtattgttttgtatttgtggTAAATATCATCAGATATTTAGAGGGTTGTTTTGATGTTAGACTTGTTAAAGGGATGatctttgtaaatatttgaataaagtTGATTATACaccttgtatttttttaatgcttcTAACAAAGCTTCATCTGTAGCAGTATACACTCGAAAAATTACATTCTGGCttcttattcaaactacttatttaaataagcTAAAGCAAAACAATTCTGGAGATTGTTTTGggaaacctaattgttttatgatcaatctacttaaattagttatgttaacttaatggatttgtgttgggaaacattaatgaattgtgtgcaaATCTGCATTTTTTAGTGTGTACCgtataatgtgaaaaaaaaaactttttaaaatgagttgaaacagcaTAATTGTTAAGTTTTTTGGGACAATTTATTTAAGCTCAATCCACTctaatttgtaaaaacatttaagtgtgttgggacaacatgaaggaattgtgtgaaataGCATTTTTTACCGAACAAAAGCAGAATAAATACAGAAATTACAACTGCAAAAG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0030057 desmosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031116-55 Predicted to enable calcium ion binding activity. Acts upstream of or within desmosome assembly; gastrulation; and heart development. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in desmosome. Is expressed in several structures, including EVL; cardiovascular system; ectoderm; peripheral olfactory organ; and pronephric duct. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 11. Orthologous to human DSC1 (desmocollin 1); DSC2 (desmocollin 2); and DSC3 (desmocollin 3).

Ensembl:

ensembl_id ENSDART00000100060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036795 lncRNA downstream 51238 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036448 lncRNA downstream 123292 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 781921 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036794 lncRNA downstream 1047677 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035311 lncRNA downstream 1090439 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00036796 lncRNA upstream 318318 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036797 lncRNA upstream 657945 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00035342 lncRNA upstream 828856 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035348 lncRNA upstream 1500665 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 2783320 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035327 mRNA downstream 85624 7149100 ~ 7176810 (-) False XLOC_017903
TCONS_00035328 mRNA downstream 85625 7160240 ~ 7176809 (-) True XLOC_017903
TCONS_00035326 mRNA downstream 128888 7122687 ~ 7133546 (-) True XLOC_017901
TCONS_00035325 mRNA downstream 133721 7122590 ~ 7128713 (-) False XLOC_017901
TCONS_00035321 mRNA downstream 181964 7070634 ~ 7080470 (-) False XLOC_017900
TCONS_00035330 mRNA upstream 149387 7443224 ~ 7582936 (-) False XLOC_017906
TCONS_00035331 mRNA upstream 184267 7478104 ~ 7583486 (-) False XLOC_017906
TCONS_00035332 mRNA upstream 249760 7543597 ~ 7547080 (-) True XLOC_017906
TCONS_00035334 mRNA upstream 352925 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035335 mRNA upstream 670519 7964356 ~ 8024582 (-) False XLOC_017910
TCONS_00035322 other downstream 190823 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 449754 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 678764 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035301 other downstream 1266731 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 1648438 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035333 other upstream 318445 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 693113 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035340 other upstream 828856 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035349 other upstream 1643066 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 2350228 9644065 ~ 9651062 (-) True XLOC_017922

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_01371462_01386606.mRNA True 2721 mRNA 0.48 16 CI01000051 1371462 ~ 1386606 (-)