RNA id: CI01000051_01371462_01386606.mRNA


Basic Information

Item Value
RNA id CI01000051_01371462_01386606.mRNA
length 2721
RNA type mRNA
GC content 0.48
exon number 16
gene id CI01000051_01371462_01386606
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1371462 ~ 1386606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGTGGAGTCCAGAGAAATTCAGCTACTGCAGACCACATACACACACAACAGGATGTATGAACGCGCGCTGTTCGCGGTCTGGCTGCTTACTTTGGTGGTGTTTCAGAAGGCTGAGTCTTGTGAGTTGAGGCCTGTTCTTGCTCAGGTTCCTAAGAGACTGCCCGCTGGTTATGTCATTTCTGAGGGCACGGAAGAATGCTGTGCGGCCAAGCCCGTGACCTTTACTTCCAGTGACCCTGACTTCGCTGTAAATACAGATGGAACCATTATCACAGTTCGTGGTTTGGTGATTACAACAAAGCGGTTTTCTGTGCTGGTGCACGACGAGAGCGGTTTGGATTGGAGGGTGGACGTTATCCTGTCCTGTAAAGATGAGGCATCTCAGAAGTCCAGCAGTGTGGCTCACAAGCGCATTAAGAGAAGATGGAGACCGTTGCCTTTTAATCTTATTGAGAATGACAGCCCTCCATTCCCAAAAGACCTGGAGATGATTGCATCTGATTCCTCTGTAAATTACACAGTGCATTATGAGATCAGTGGGCAAGGTGTTACGACAGAACCTGTGGGCCTTTTCCTTCTCATCAAGGAAACTGGCATGCTGAGAGTGACCAGGGCCGTCGACCGTGAGCAGTACCCAGAATTCAGATTTATCGCTCGTGTGTTTGACCAAAATGGCAGGGAAGTTGATGAATTTCTGCCCATCACTGTGATTGTGGAGGATAAGAATGACAACGCCCCTGAGTTCACAGGAGGTCGCGTATTCACTGTAGAAGAACGGTGCAGGGCAGGTACTTTAATAGGAAAAGTGAATGCCACAGATAAAGATCTGGCAAATACCCTCCACACCAAGATCAAGTTTACTCTGCTCAACGCTACTGACATGTTCTCTATTGATCCTTCTACTGGAGCATTGACCGCTAAAACCAACACCTTAGACAGAGAGGCTCAGGACAAAGTCTATGTTAACATAGAGATCAGAGATATGGGCGGCGCTCCTAATGGGCTCTTCAACAGAGGAACTGTTGTGATTATTCTCACAGATGTTAATGATAACCCTCCTACCTTTAAAGAGAAGTTGTACAAAGCCAAGGTCCAGGAGAACCAAGAAAATGTGCTAGTTACTAGGATCCCAGTGGAAGACAAGGATTTGGTGAACACCTCCAACTGGAAGGCCCTCTTTGAGGTCACCAAAGGAAATGAAAGTGGACAATTCAGGATGGAGACAGACCCCAAAACCAACGAGGGGCTTCTGTATGTCATAAAGGGATTGGATTTTGAAAAAACTCCAGTGGTGCAGCTGGAAATTACTGCCCGTAATGAGGTTCCACTGGTTGGGACTGACGCGACCTGGCTCTCTGTGCCACTCGAGCTCAGTGTGGGAGATGAAGATGAAGGACCAGAGTTCAACCCTGCCATTCTATATCTCAAAGTCAAGGAGAATGTTCCCAATGGAACCGTCATTGGAACCTATAAAGCTCTGGACCCAGAGACCAAGAACAGCAATGGCATAAAGTACTATAAGATGACTGACCCAGGTAACTGGATCACTGTGGTGGAGAACACTGGAGAACTGAAAACAGCCAATACTATAGACCGAGAATCACCTTTGGTCCACAACGACAAGTACAACATAACCATCAGAGCAGTGGATGACAGTAAGAAGACAGGAAAGGGGATGGTAATCATCCAGATCGAAGACGAAAATGACAACATGCCTGTGATTCCCAATACTGACCTGGTCATCTGTAATAAGGGTGATACGCTGAGCTCAGTTCTGGTTGAAGCTGTGGACCTCGACAAGCCACCTTACTCCACTCCCTTCATTTTCGAAATTGGAGCAGAGAATGATGGGAAGTGGAAACTGAAGGATAAAACAGATTCCTCCGTGGTGCTGGAACAGGCAGTGGTCATGCCAAACGGTCTCTACACTGTCCCTCTCTTGGTGAAGGATCTGCAGGGAATCGGGAAAGAGCAGACCGTGAATGTGCGAGTGTGCTCCTGTGAAAGAGAGGACAATGGAGCGGGAATATGTGGGGCTCGAAGTGCCTCCACCTCTTTGGGAAATTTGGGAATCCTTGCCTTAGTGCTTTCTAGCCTGCTGCTGCTACTGTTATGTCTGTTACTCATCTTCATATGCAGTACGAAGAGAGACAAGCTGTACATCAGTGATGATACTGGAACAGGAGGAATGCTGCTGAAATCCAACACTGAGGCTCCTGGTGAAGAAGTGAAGGACGGAGCTTTGATGATTATTCCTGGTGGAGATGTAGTGGACGGGTCACTACAGATCAGCGCCATGGACAGTAAGAACGTGACTGCAGGACGTTATGGGGATCAGTTTATCCAGGGAGGTGGTGTGTACAACACCACCACTCAAGAATTTGGGACAGGAAAGTACTGCACATCCGGACGCTATGATAACAACATGTATGGCAACACCGTGTTCAAGAAATTCTCAAATACGAGTACTCACGACACATGGAAAACTAATGGACACTACTTGGACAGAAAACTGGCTTACTTCGGAGACGAGGAGGAGGGGCGGTACGCGGATGACATGCTGAAGACTTATGGGAATGAGGGGGCAGGCTCTCTTGCAGGCTCTGTAGGATGTTGTAGCCTCTTGGGTGATCAGGAATCAATGGACTTTTTGAATACTCTCGGCCCCAAATTCAGACCACTGGCTGACGTCTGCTACACAACAAAAAAAATGGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247084 lncRNA downstream 193191 1178026 ~ 1178271 (-) True G217813
TU247062 lncRNA downstream 215412 1155817 ~ 1156050 (-) True G217791
TU247060 lncRNA downstream 215884 1155361 ~ 1155578 (-) True G217789
TU247056 lncRNA downstream 219754 1151289 ~ 1151708 (-) True G217785
TU247054 lncRNA downstream 220997 1150241 ~ 1150465 (-) True G217783
TU247831 lncRNA upstream 1651 1388257 ~ 1388513 (-) True G218497
TU247855 lncRNA upstream 52570 1439176 ~ 1443058 (-) True G218521
TU247866 lncRNA upstream 104057 1490663 ~ 1490879 (-) True G218532
TU247892 lncRNA upstream 159024 1545630 ~ 1545866 (-) True G218558
TU247905 lncRNA upstream 279098 1665704 ~ 1665926 (-) True G218568
CI01000051_01015039_01066156.mRNA mRNA downstream 305145 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_00846746_00856041.mRNA mRNA downstream 515421 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_00824615_00825825.mRNA mRNA downstream 545386 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00809947_00817933.mRNA mRNA downstream 553529 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00787723_00808318.mRNA mRNA downstream 562438 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_01468663_01486168.mRNA mRNA upstream 81813 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01511542_01512516.mRNA mRNA upstream 124537 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01528013_01535266.mRNA mRNA upstream 141303 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01560871_01627451.mRNA mRNA upstream 174222 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01644907_01652696.mRNA mRNA upstream 258194 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
TU246773 other downstream 804307 567040 ~ 567155 (-) True G217528
TU246751 other downstream 965667 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 975480 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1088833 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 1128436 242582 ~ 243026 (-) True G217491
TU247764 other upstream 322692 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1140737 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1453664 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1572982 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2769124 4155730 ~ 4158103 (-) True G220041

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035329 True 4846 mRNA 0.41 16 NC_007131.7 7262434 ~ 7293837 (-)