RNA id: TU247892


Basic Information

Item Value
RNA id TU247892
length 237
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G218558
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1545630 ~ 1545866 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTATGTTCAAGCTTACACAGTCAAACCAAAAATTATTCAGACATTTTTGATATTTTTGATATATTTTTCCTAGTGGGTTCAGGACACTATAGTTCATTTATGTAAGTGAGGATAGCAAAATAAAGTAAACTGTGACATATTATACCCAAGAATTCTTCATACAGTGGACTACCAGTAAAATTGATAAAAATTTGGAACCAAAAAAATTATTCAGACACTTAGACCTGACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247866 lncRNA downstream 54751 1490663 ~ 1490879 (-) True G218532
TU247855 lncRNA downstream 102572 1439176 ~ 1443058 (-) True G218521
TU247831 lncRNA downstream 157117 1388257 ~ 1388513 (-) True G218497
TU247084 lncRNA downstream 367359 1178026 ~ 1178271 (-) True G217813
TU247062 lncRNA downstream 389580 1155817 ~ 1156050 (-) True G217791
TU247905 lncRNA upstream 119838 1665704 ~ 1665926 (-) True G218568
TU247906 lncRNA upstream 120621 1666487 ~ 1666830 (-) True G218569
TU247908 lncRNA upstream 123401 1669267 ~ 1669721 (-) True G218571
TU247909 lncRNA upstream 123865 1669731 ~ 1669947 (-) True G218572
TU247910 lncRNA upstream 128585 1674451 ~ 1674681 (-) True G218573
CI01000051_01528013_01535266.mRNA mRNA downstream 10364 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01511542_01512516.mRNA mRNA downstream 33076 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01468663_01486168.mRNA mRNA downstream 58458 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01371462_01386606.mRNA mRNA downstream 159024 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01015039_01066156.mRNA mRNA downstream 479313 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_01560871_01627451.mRNA mRNA upstream 14962 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01644907_01652696.mRNA mRNA upstream 98934 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01716468_01720230.mRNA mRNA upstream 170593 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01785489_01787612.mRNA mRNA upstream 238616 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01789888_01790134.mRNA mRNA upstream 243895 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
TU246773 other downstream 978475 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1139835 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1149648 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1263001 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 1302604 242582 ~ 243026 (-) True G217491
TU247764 other upstream 163432 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 981477 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1294404 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1413722 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2609864 4155730 ~ 4158103 (-) True G220041

Expression Profile