RNA id: CI01000051_01528013_01535266.mRNA


Basic Information

Item Value
RNA id CI01000051_01528013_01535266.mRNA
length 1387
RNA type mRNA
GC content 0.54
exon number 4
gene id CI01000051_01528013_01535266
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1527909 ~ 1535266 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTTGTTCACTATGTGGAAACAGTATGCTGCTGTATGTGTCCTACAAGAAGAAGCACCTGTTAAAACCAGCCGAGTTCTTCATTATTAACCTGGCCATCAGTGACCTGGGCATGACCCTCAGCCTCTACCCCCTCGCGGTCACCTCAAGCCTCGCCCACAGGTGGCTTTATGGAAGGACAGTCTGTGTAATCTATGCCTTCTGTGGTGTTTTGTTCGGGATCTGCTCTCTGACCACTCTCACTATACTCAGCACTGTTTGCTGCCTCAAAGTCTGCTATCCACTTCACGGTAATAGGTTCAGCTATGAGCACGGTCGTGTGTTAATAGCGTGTGCGTGGGCCTATGCTCTCGTGTTCGCTTGCTCCCCTCTTGCCCACTGGGGGCAGTATGGTCCGGAACCCTACGGCACGGCCTGCTGTATCGACTGGGCCTGGTCCAATCACAACTCAGTTGCCCGCTCCTACACCACAGTGCTCTTCATCGCCTGTTACCTGCTGCCGTGTGGCATCATCATTGTCTCCTACACACGCATACTGCTCACGGTCCGAGAGTCCCGCAGAGCGGTGGAGCAGCACGTCTCAGCGCAGACACGCATGGGGAACATCCAGGCCATTATAGTGAAGTTGAGTGTGGCGGTGTGTATAGGATTCTTCACTGCATGGAGTCCGTACGCACTGGTGTCTATGTGGGCGGCGTTCGGCCATTTTGAGGACATCTCGCCCCTGGCCTTTGCCATCCCCGCAGTTTTTGCCAAATCCTCCACTCTTTATAACCCTCTCATCTACCTCTTGCTCAAACCCAACTTCCGCCACCTCCTCTGCAAGGACATGCGCTCCCTGCGAGGGGTTTGCGTGCACCACTGCCTGTGCCAATGTTTTCCCCGCTGGAGCTACCGCCCATCGCTAGCCCTCAGTCTGCAGCCCCTGCGGCGAAGAGGCCAATCCATCTCAGATTCCATGGGGGGGCCCGTAGGTCATTGTCACTGCCCTTGCGAAAGGTGCAACGACCCATTTGAGCAGTTTAAGCACTTCCCACGCCGCTGTCCCGTCAACGTGAACACTGTGCAGTTGTCTCTGCAGGACAGCACCGAACCCGAATTGGAGCCGGAACGAGAACCTAGAGTGATAAAAGAACTCAAACCAAAGAGCCAAACAATGGAGTGTAAGAAGTCCGTGCGGGTGATTGTGAGGGGGCGGAGATGCTCCGAGATTGACAGTCTGGAGATCACCTTGGAAACGGTGCCTGCTCATGGCAAAGCTACCAAAAACGCCAAACCGTAACACCTGAGCCTGTGTGTGGGTGTGTGTTTATACTCGTGCGGTGAGTGTGTGTATTCACTTGTCTCAAAGGGGAGTAAATAGACTTTGACATATGCCTCAATTAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247866 lncRNA downstream 37030 1490663 ~ 1490879 (-) True G218532
TU247855 lncRNA downstream 84851 1439176 ~ 1443058 (-) True G218521
TU247831 lncRNA downstream 139396 1388257 ~ 1388513 (-) True G218497
TU247084 lncRNA downstream 349638 1178026 ~ 1178271 (-) True G217813
TU247062 lncRNA downstream 371859 1155817 ~ 1156050 (-) True G217791
TU247892 lncRNA upstream 10364 1545630 ~ 1545866 (-) True G218558
TU247905 lncRNA upstream 130438 1665704 ~ 1665926 (-) True G218568
TU247906 lncRNA upstream 131221 1666487 ~ 1666830 (-) True G218569
TU247908 lncRNA upstream 134001 1669267 ~ 1669721 (-) True G218571
TU247909 lncRNA upstream 134465 1669731 ~ 1669947 (-) True G218572
CI01000051_01511542_01512516.mRNA mRNA downstream 15355 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01468663_01486168.mRNA mRNA downstream 40737 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01371462_01386606.mRNA mRNA downstream 141303 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01015039_01066156.mRNA mRNA downstream 461592 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_00846746_00856041.mRNA mRNA downstream 671868 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_01560871_01627451.mRNA mRNA upstream 25562 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01644907_01652696.mRNA mRNA upstream 109534 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01716468_01720230.mRNA mRNA upstream 181193 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01785489_01787612.mRNA mRNA upstream 249216 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01789888_01790134.mRNA mRNA upstream 254495 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
TU246773 other downstream 960754 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1122114 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1131927 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1245280 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 1284883 242582 ~ 243026 (-) True G217491
TU247764 other upstream 174032 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 992077 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1305004 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1424322 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2620464 4155730 ~ 4158103 (-) True G220041

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035312 True 1368 mRNA 0.53 5 NC_007131.7 6241855 ~ 6278817 (-)