RNA id: CI01000051_00846746_00856041.mRNA



Basic Information


Item Value
RNA id CI01000051_00846746_00856041.mRNA
length 1147
RNA type mRNA
GC content 0.53
exon number 4
gene id CI01000051_00846746_00856041
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 846502 ~ 856041 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCAGCCTTCAAAGGTGTGTGGACTCAGGAGTTCTGGCGAGCGGTTTCGGGGGAGTTCTTAGCCATGATAATATTCGTGCTGCTTAGTCTGGGATCCACCATCAACTGGACAGCAAAACAGGAGAACCCTCCACCTGCCGACCTCGTCCTCATCTCTCTCTGCTTCGGCTTATCCATAGCAACCCTCGCCCAATGTTTCGGGCACATCAGCGGTGCCCACATCAACCCGGCCGTGACTGCGGCGATGGTTGCCACACGGAAGCTGAGCCTGGCAAAGGGTGTTTTTTATTTGGTGGCACAGTGTCTGGGGGCAGTGGTGGGGGCGGCCATCTTGTACGGAGTGACACCAGCATCAGTGAGAGGAGGACTGGGAGTGACTTCTGTCAATACTGAAATCTCCACTGGTCATGCCATTGTGATAGAGCTCATAATCACTTTTGAGCTCGTCTTCACCGTCTTTGCCACCTGTGACCCCAAGCGCAGTGATCTTAAAGGTTCGGCAGCGCTGGCCATTGGTCTGTCGGTGTGCATCGGCCATCTGTTTGCTATCCCGTACACTGGAGCCAGCATGAATCCAGCTCGCTCTTTTGGTCCTGCGGTCATCATGGGAAAATGGCAGGACCATTGGGTGTACTGGGTGGGCCCTTTAATAGGGGGCATCATGGCTGCCGCTGTGTACGAATATCTATTCTGTCCCGACCCTGACCTGAAGCGGCGCTATGCCGAAGTCCTCTCCAAGAGCCCCTTCCAAATCGACCCGTATCGGGTAGTGGACACAGAAACGTACCCCAGCAATCAAGGCCAGCACATGCCCAAGCAGGAAGTGATCCGCGTGCTGGAGCTGGAGCGGGCCGAGAAGAAGGAGAGGGAGTCGGCTGGAGAAGTGCTGTCGTCTGTATGACTAGTGAGAGGCACTGAGGAGGAGCTCAAAGAGACGGATCTGATCTAGAGTCGCAGTGTGAATCTTCTACAGAATGACTCCCAACACTTGACTTTAATCATTAAGAATGGTCTGACGCTCTTCCCTGTACGCCAGTCACAGCCCATAGACCTCATATCCAATAGACTCCACTTTGAAGATTTCAGCCAGTCACTGAACATCCTTTAGCAGATGCACCTCATCAACCGCTGAATCAATAACTAAA

Function


GO:

id name namespace
GO:0009992 cellular water homeostasis biological_process

KEGG:

id description
K09866 AQP4; aquaporin-4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU246921 lncRNA downstream 80564 765579 ~ 765938 (-) True G217660
TU246902 lncRNA downstream 131917 713773 ~ 714585 (-) True G217647
TU246758 lncRNA downstream 157975 683662 ~ 688527 (-) True G217513
TU246854 lncRNA downstream 259130 586863 ~ 587372 (-) True G217607
TU246853 lncRNA downstream 261047 585219 ~ 585455 (-) True G217606
TU246956 lncRNA upstream 14296 870337 ~ 871281 (-) True G217688
TU246966 lncRNA upstream 34905 890946 ~ 891323 (-) True G217698
TU246999 lncRNA upstream 87473 943514 ~ 974530 (-) True G217731
TU246767 lncRNA upstream 201487 1112020 ~ 1112123 (-) True G217522
TU247050 lncRNA upstream 282441 1138482 ~ 1138785 (-) True G217779
CI01000051_00824615_00825825.mRNA mRNA downstream 20426 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00809947_00817933.mRNA mRNA downstream 28569 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00787723_00808318.mRNA mRNA downstream 37478 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_00761469_00766842.mRNA mRNA downstream 79660 761453 ~ 766842 (-) True CI01000051_00761469_00766842
CI01000051_00609069_00611567.mRNA mRNA downstream 234935 608741 ~ 611567 (-) True CI01000051_00609069_00611567
CI01000051_01015039_01066156.mRNA mRNA upstream 158765 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_01371462_01386606.mRNA mRNA upstream 515421 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01468663_01486168.mRNA mRNA upstream 612378 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01511542_01512516.mRNA mRNA upstream 655102 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01528013_01535266.mRNA mRNA upstream 671868 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
TU246773 other downstream 279347 567040 ~ 567155 (-) True G217528
TU246751 other downstream 440707 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 450520 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 563873 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 603476 242582 ~ 243026 (-) True G217491
TU247764 other upstream 853257 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1671302 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1984229 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2103547 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 3299689 4155730 ~ 4158103 (-) True G220041

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034312 False 1042 mRNA 0.53 5 NC_007131.7 18163355 ~ 18186784 (+)