RNA id: TU246921


Basic Information

Item Value
RNA id TU246921
length 321
lncRNA type intronic
GC content 0.37
exon number 2
gene id G217660
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 765579 ~ 765938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAACTCTTTTTTTCTTTTTTAGAGTTAACTCTTTTTTTAGAGTGTAGTATTGGGGTTCTAGGACAACAAAGTTGTCTCTTCAGCTCAGCTAGTCAAAACTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTTTTGCCCACATCTCAGGGACTAATGTCCCAACAAGTACGGTAAAATCTGAATGAGGAAAATGGCTTAATAAACATACTAAATAATGTCTTAATGAAACTGTATAGGATTCATAAATGTTTATGTGAGAATTTAGTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246902 lncRNA downstream 50994 713773 ~ 714585 (-) True G217647
TU246758 lncRNA downstream 77052 683662 ~ 688527 (-) True G217513
TU246854 lncRNA downstream 178207 586863 ~ 587372 (-) True G217607
TU246853 lncRNA downstream 180124 585219 ~ 585455 (-) True G217606
TU246844 lncRNA downstream 233110 532165 ~ 532469 (-) True G217599
TU246956 lncRNA upstream 104399 870337 ~ 871281 (-) True G217688
TU246966 lncRNA upstream 125008 890946 ~ 891323 (-) True G217698
TU246999 lncRNA upstream 177576 943514 ~ 974530 (-) True G217731
TU246767 lncRNA upstream 291590 1112020 ~ 1112123 (-) True G217522
TU247050 lncRNA upstream 372544 1138482 ~ 1138785 (-) True G217779
CI01000051_00609069_00611567.mRNA mRNA downstream 154012 608741 ~ 611567 (-) True CI01000051_00609069_00611567
CI01000051_00568303_00576339.mRNA mRNA downstream 189240 567867 ~ 576339 (-) True CI01000051_00568303_00576339
CI01000051_00560810_00563417.mRNA mRNA downstream 202162 560768 ~ 563417 (-) False CI01000051_00560810_00563417
CI01000051_00520062_00525658.mRNA mRNA downstream 239921 519810 ~ 525658 (-) True CI01000051_00520062_00525658
CI01000051_00505008_00505358.mRNA mRNA downstream 260111 505008 ~ 505468 (-) True CI01000051_00505008_00505358
CI01000051_00787723_00808318.mRNA mRNA upstream 21785 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_00809947_00817933.mRNA mRNA upstream 44009 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00824615_00825825.mRNA mRNA upstream 58677 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00846746_00856041.mRNA mRNA upstream 80564 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_01015039_01066156.mRNA mRNA upstream 248868 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
TU246773 other downstream 198424 567040 ~ 567155 (-) True G217528
TU246751 other downstream 359784 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 369597 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 482950 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 522553 242582 ~ 243026 (-) True G217491
TU247764 other upstream 943360 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1761405 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 2074332 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2193650 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 3389792 4155730 ~ 4158103 (-) True G220041

Expression Profile