RNA id: CI01000051_00609069_00611567.mRNA


Basic Information

Item Value
RNA id CI01000051_00609069_00611567.mRNA
length 706
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000051_00609069_00611567
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 608741 ~ 611567 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTTCCCAGACTCCCATGAAAGGTTCCCTAAGCTTTCCAAACGCTTGCCGTCGATCGTGGTGGAGCCCACTGAGAGCGGGGAGGTAGAGAGCGGGGAACTGCGCTGGCCTCCTGATGATCTGAGCCCTACAGACGACCCCAGAGACAAACAGGCCCAGGCTGCATCATCAGATGCGAATGCATTTGCAGGGATGTTTGAATATATGTATGTATTTCAGGTGACAAGCTCACAGAAGACAGCCAAGAGGTCGAAACGGGGACGGAAATCTAAGAGGCGATGGTTGGCACTAATCCAGCCAATCACTGTGAATGTCTTCATTACGGACAGGAGTGAATGGGAGACTCCACCAGTTAGGTCTGCCTATCATCCACACTAGAGCCGCCCACCTGTTGACCTCCACTCCCCTAGGTGGAGCCGAGGCCTGAGAGACTGTCTTCACTGAACTAGCTCATGTGCCAAACTCTAGTGGTAGTCAGCTGCTGTGAGTTTTAAATTATCTCCAATAACACCACGATACCCATTAGAAGTCACCTACTCTGTATGCCTGCTAAATTATAGATTGGCATTCACTTATGTATTGATTTGCTTTGGACCAAAGTCTTTCATTCCTTCATATCAAAAGGATCTTAATTTGTTGTAGAATATCAGCATACTTTAAGTGAAAATGGATTTCAGATAACTAGAGTGCATAATGAAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246854 lncRNA downstream 21369 586863 ~ 587372 (-) True G217607
TU246853 lncRNA downstream 23286 585219 ~ 585455 (-) True G217606
TU246844 lncRNA downstream 76272 532165 ~ 532469 (-) True G217599
TU246842 lncRNA downstream 78957 529584 ~ 529784 (-) True G217597
TU246772 lncRNA downstream 126541 475707 ~ 482200 (-) True CI01000051_00478608_00478959
TU246758 lncRNA upstream 72095 683662 ~ 688527 (-) True G217513
TU246902 lncRNA upstream 102206 713773 ~ 714585 (-) True G217647
TU246921 lncRNA upstream 154012 765579 ~ 765938 (-) True G217660
TU246956 lncRNA upstream 258770 870337 ~ 871281 (-) True G217688
TU246966 lncRNA upstream 279379 890946 ~ 891323 (-) True G217698
CI01000051_00568303_00576339.mRNA mRNA downstream 32402 567867 ~ 576339 (-) True CI01000051_00568303_00576339
CI01000051_00560810_00563417.mRNA mRNA downstream 45324 560768 ~ 563417 (-) False CI01000051_00560810_00563417
CI01000051_00520062_00525658.mRNA mRNA downstream 83083 519810 ~ 525658 (-) True CI01000051_00520062_00525658
CI01000051_00505008_00505358.mRNA mRNA downstream 103273 505008 ~ 505468 (-) True CI01000051_00505008_00505358
CI01000051_00478608_00478959.mRNA mRNA downstream 129782 478230 ~ 478959 (-) False CI01000051_00478608_00478959
CI01000051_00761469_00766842.mRNA mRNA upstream 149886 761453 ~ 766842 (-) True CI01000051_00761469_00766842
CI01000051_00787723_00808318.mRNA mRNA upstream 176156 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_00809947_00817933.mRNA mRNA upstream 198380 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00824615_00825825.mRNA mRNA upstream 213048 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00846746_00856041.mRNA mRNA upstream 234935 846502 ~ 856041 (-) True CI01000051_00846746_00856041
TU246773 other downstream 41586 567040 ~ 567155 (-) True G217528
TU246751 other downstream 202946 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 212759 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 326112 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 365715 242582 ~ 243026 (-) True G217491
TU247764 other upstream 1097731 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1915776 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 2228703 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2348021 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 3544163 4155730 ~ 4158103 (-) True G220041

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034326 True 1066 mRNA 0.45 3 NC_007131.7 18580176 ~ 18595555 (+)