RNA id: TU246956


Basic Information

Item Value
RNA id TU246956
length 207
lncRNA type inter_gene
GC content 0.29
exon number 3
gene id G217688
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 870337 ~ 871281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAAGTCAAAATTGTGTGATATAAAGTCGCAATTGCGAGCTTTAGTCAAAATTGCAAAATATAAACTTGCAATTCTGAGAAAAAAGTGTCTTTTTTTCCCTCAGAATTGAACTTTACAAGTCGCAAAATTTTGACTTAATAACTCACAATTGCAAGTTTATATCTCACAATTGCAAGAGAAAAAGTCAGATTTTTTTTATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246921 lncRNA downstream 104399 765579 ~ 765938 (-) True G217660
TU246902 lncRNA downstream 155752 713773 ~ 714585 (-) True G217647
TU246758 lncRNA downstream 181810 683662 ~ 688527 (-) True G217513
TU246854 lncRNA downstream 282965 586863 ~ 587372 (-) True G217607
TU246853 lncRNA downstream 284882 585219 ~ 585455 (-) True G217606
TU246966 lncRNA upstream 19665 890946 ~ 891323 (-) True G217698
TU246999 lncRNA upstream 72233 943514 ~ 974530 (-) True G217731
TU246767 lncRNA upstream 186247 1112020 ~ 1112123 (-) True G217522
TU247050 lncRNA upstream 267201 1138482 ~ 1138785 (-) True G217779
TU247054 lncRNA upstream 278960 1150241 ~ 1150465 (-) True G217783
CI01000051_00846746_00856041.mRNA mRNA downstream 14296 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_00824615_00825825.mRNA mRNA downstream 44261 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00809947_00817933.mRNA mRNA downstream 52404 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00787723_00808318.mRNA mRNA downstream 61313 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_00761469_00766842.mRNA mRNA downstream 103495 761453 ~ 766842 (-) True CI01000051_00761469_00766842
CI01000051_01015039_01066156.mRNA mRNA upstream 143525 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_01371462_01386606.mRNA mRNA upstream 500181 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01468663_01486168.mRNA mRNA upstream 597138 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01511542_01512516.mRNA mRNA upstream 639862 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01528013_01535266.mRNA mRNA upstream 656628 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
TU246773 other downstream 303182 567040 ~ 567155 (-) True G217528
TU246751 other downstream 464542 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 474355 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 587708 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 627311 242582 ~ 243026 (-) True G217491
TU247764 other upstream 838017 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1656062 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1968989 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2088307 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 3284449 4155730 ~ 4158103 (-) True G220041

Expression Profile