RNA id: TU247831


Basic Information

Item Value
RNA id TU247831
length 237
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G218497
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1388257 ~ 1388513 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACATGAAATTCAATGAGGCCTGAAAGGATATAAGCAATAAAACTGCATAAATAGTCACATCAAAACAAAGTTCAAATAACGGTGCTTTACATAAACAGGTTACTCCTACTCTTTCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCAAAACTCAGTGAGAAAGAGGTGCTCAGTCTTCAGAAATGATGAAAATCAACCTCAGAAGGCCAGGCTAAATATGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247084 lncRNA downstream 209986 1178026 ~ 1178271 (-) True G217813
TU247062 lncRNA downstream 232207 1155817 ~ 1156050 (-) True G217791
TU247060 lncRNA downstream 232679 1155361 ~ 1155578 (-) True G217789
TU247056 lncRNA downstream 236549 1151289 ~ 1151708 (-) True G217785
TU247054 lncRNA downstream 237792 1150241 ~ 1150465 (-) True G217783
TU247855 lncRNA upstream 50663 1439176 ~ 1443058 (-) True G218521
TU247866 lncRNA upstream 102150 1490663 ~ 1490879 (-) True G218532
TU247892 lncRNA upstream 157117 1545630 ~ 1545866 (-) True G218558
TU247905 lncRNA upstream 277191 1665704 ~ 1665926 (-) True G218568
TU247906 lncRNA upstream 277974 1666487 ~ 1666830 (-) True G218569
CI01000051_01371462_01386606.mRNA mRNA downstream 1651 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01015039_01066156.mRNA mRNA downstream 321940 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_00846746_00856041.mRNA mRNA downstream 532216 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_00824615_00825825.mRNA mRNA downstream 562181 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00809947_00817933.mRNA mRNA downstream 570324 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_01468663_01486168.mRNA mRNA upstream 79906 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01511542_01512516.mRNA mRNA upstream 122630 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01528013_01535266.mRNA mRNA upstream 139396 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01560871_01627451.mRNA mRNA upstream 172315 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01644907_01652696.mRNA mRNA upstream 256287 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
TU246773 other downstream 821102 567040 ~ 567155 (-) True G217528
TU246751 other downstream 982462 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 992275 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1105628 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 1145231 242582 ~ 243026 (-) True G217491
TU247764 other upstream 320785 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1138830 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1451757 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1571075 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2767217 4155730 ~ 4158103 (-) True G220041

Expression Profile