RNA id: TU247056


Basic Information

Item Value
RNA id TU247056
length 420
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G217785
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1151289 ~ 1151708 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATTATAAAAATAAATAATGAGCTGTAAGTTTGTTAGAAAAAACGGCACCATCTCAGAGGCCCTGAAGTATGTGTAAAGTATTTGTGTGTGGGTGTGCGTGCAAGAGTACTACAGTTTTACAGACTGGCACTACGAAATCTGTTTTTGCAAAATGCATGCTGCCTAGTGAGGGTGTGTGGAGTCAGTCTTGAGCAGTTATGGATTTTTACAATATTTTTTTTTTTTTTTTTTTACAAGTTTTTACAATTGCATCATGCACCTTTTTTGGAGAGAGAGCAATAGTGACAGTCCTGGTTCCCTAGGCAAGATAAGACATGACCAAATAAAACACACACACACACACACACACACACACACACACAACTAGGCATTCTCCCAAATGGCACATGTGATGTGTTCCCATTGACTTTCTATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247054 lncRNA downstream 824 1150241 ~ 1150465 (-) True G217783
TU247050 lncRNA downstream 12504 1138482 ~ 1138785 (-) True G217779
TU246767 lncRNA downstream 39166 1112020 ~ 1112123 (-) True G217522
TU246999 lncRNA downstream 176759 943514 ~ 974530 (-) True G217731
TU246966 lncRNA downstream 259966 890946 ~ 891323 (-) True G217698
TU247060 lncRNA upstream 3653 1155361 ~ 1155578 (-) True G217789
TU247062 lncRNA upstream 4109 1155817 ~ 1156050 (-) True G217791
TU247084 lncRNA upstream 26318 1178026 ~ 1178271 (-) True G217813
TU247831 lncRNA upstream 236549 1388257 ~ 1388513 (-) True G218497
TU247855 lncRNA upstream 287468 1439176 ~ 1443058 (-) True G218521
CI01000051_01015039_01066156.mRNA mRNA downstream 84972 1014806 ~ 1066317 (-) False CI01000051_01015039_01066156
CI01000051_00846746_00856041.mRNA mRNA downstream 295248 846502 ~ 856041 (-) True CI01000051_00846746_00856041
CI01000051_00824615_00825825.mRNA mRNA downstream 325213 824615 ~ 826076 (-) True CI01000051_00824615_00825825
CI01000051_00809947_00817933.mRNA mRNA downstream 333356 809947 ~ 817933 (-) True CI01000051_00809947_00817933
CI01000051_00787723_00808318.mRNA mRNA downstream 342265 787723 ~ 809024 (-) True CI01000051_00787723_00808318
CI01000051_01371462_01386606.mRNA mRNA upstream 219754 1371462 ~ 1386606 (-) True CI01000051_01371462_01386606
CI01000051_01468663_01486168.mRNA mRNA upstream 316711 1468419 ~ 1487172 (-) True CI01000051_01468663_01486168
CI01000051_01511542_01512516.mRNA mRNA upstream 359435 1511143 ~ 1512554 (-) True CI01000051_01511542_01512516
CI01000051_01528013_01535266.mRNA mRNA upstream 376201 1527909 ~ 1535266 (-) True CI01000051_01528013_01535266
CI01000051_01560871_01627451.mRNA mRNA upstream 409120 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
TU246773 other downstream 584134 567040 ~ 567155 (-) True G217528
TU246751 other downstream 745494 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 755307 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 868660 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 908263 242582 ~ 243026 (-) True G217491
TU247764 other upstream 557590 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 1375635 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 1688562 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1807880 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 3004022 4155730 ~ 4158103 (-) True G220041

Expression Profile