XLOC_018308 (CR847530.1)


Basic Information

Item Value
gene id XLOC_018308
gene name CR847530.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39919232 ~ 39920174 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036047
GATGATGGCAAGCGGTTAAATGGAGAAAAGTAATTTGAGCTCTTGCCTTCAAGCGGGAGAAAGACCAAAGAAAAACCAAACgatgaatttacagaaatgtctgttactcAACCATGGAAGGTGGTGAAGTGCAACAAAGGAGTCCTGGAGATTTTTGACAAAGGAAGCAACGTGACAGATGTGTCCCGAAAGTATGGTGTGGACTGAAACACGATTATGCAGAGTGCAGCTATTGCTGAACTGGCCATTGCAGCTCTTATTTTATGCAGAACTATACAGAAATTCAAAATAAACAGGGAGAGAAATTATTAAGCATTTACACAAAATTGTCAAGATGATATTATGGCAGATGAGAGCATTGCCCACAAAATACAACCCATGAAAAATGAGGGGAAgttgcttttaataaaaaaattattgattgttgtaaagaaaaaaaaaggttttatatgtatatgtatatacactttttatactttatttttttattgtttaattgttatgttacttatttgtttcttttttatatattattgcaCAGTAATGTACATTAATAAAGATTTTGAAAGTCTAAG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036047 True 575 lncRNA 0.33 2 39919232 39920174

Neighbor

gene id symbol gene type direction distance location
XLOC_018306 rnf217 coding downstream 129386 39749448 ~ 39789846 (-)
XLOC_018305 NA coding downstream 172795 39744195 ~ 39746437 (-)
XLOC_018304 tpd52l1 coding downstream 183245 39691793 ~ 39735987 (-)
XLOC_018303 BX936317.1 coding downstream 233105 39601856 ~ 39686127 (-)
XLOC_018302 hey2 coding downstream 322894 39588897 ~ 39596338 (-)
XLOC_018309 NA coding upstream 295195 40215369 ~ 40254485 (-)
XLOC_018310 clvs2 coding upstream 349717 40269891 ~ 40319890 (-)
XLOC_018311 NA coding upstream 409932 40330106 ~ 40336899 (-)
XLOC_018312 smpdl3a coding upstream 417249 40337423 ~ 40367493 (-)
XLOC_018313 fabp7b coding upstream 449083 40369257 ~ 40370736 (-)
XLOC_017928 CU539064.1 misc downstream 29865531 10053405 ~ 10053701 (-)
XLOC_018296 NA non-coding downstream 416265 39375883 ~ 39502967 (-)
XLOC_018322 BX510919.2 non-coding upstream 1307890 41228064 ~ 41228179 (-)
XLOC_018323 NA non-coding upstream 1317530 41237704 ~ 41242669 (-)
XLOC_018324 BX510919.3 non-coding upstream 1432672 41352846 ~ 41352960 (-)
XLOC_018299 NA non-coding downstream 504974 39410844 ~ 39414258 (-)
XLOC_018298 NA non-coding downstream 514263 39404209 ~ 39404969 (-)

Expression


Co-expression Network