XLOC_018525


Basic Information

Item Value
gene id XLOC_018525
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54483765 ~ 54488224 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036529
tgctcaaacacttaaacaaatgcttggttgtccagtgtaattgtgatgtccatgtcaaataaataaataaataaataaaataaaacgcccataatgatgctctaaactgagTGGAGGAGCAACTTCTGTAGAGCAGCACCCCATAATGTCTGTGcagattatattgttttacacacacacacatttaaaatacaatatctAATATTAGACTTGGTGAAAGCATGCACTCGCTCTCCAGATTAACTGGAATACATGTGAACAGCACATATAGagtctgtgtttcctttacacaTTATTGACAACATTACATATCCTATTCTACAACACCACATCACTTACAAAAGCCAACACTATTCTAATATCAGATATAAatcatatacatacataaacaatGAGGCCATTTATTaggaaattaaatgtaataattattatctATTAGAAATGAACTAAtcacactttaataataatattaataaattagatgtaacataaatgcATGCATGTGATTCACTGAAGCGTGCAGTACACAAACTGACATTACCGAATAAGCTGAGCCAAGATCATCAGTGtacaactcacacacacacacacacacacacactctgtgtcCTGTACACTCATACTGAGAACTGAATCAGTCAGTCAGCCTCCTGTACTCCTCCACCCAGATCAGCTCCAGTGTTTAAAATCCTCATTTCCTATAGATGACCTGCTTCAATGGTTTCTTTAAATCTGTGGCACACAACTAATAAACATGTTGGAAATATTGACAGCAGGGGCCTGTATGGTGGAAGTGCTAGAGTGTGTGGGGGTCTGTCATTGACTGAATTGTAATTGGAGCGATGTGctaaagaaagccccgcccacttatGAATATGCAGATTCAGCTGGAAGCGCAGCAGCTTACTTACTTCAGCAGCTTCCTGTTCATACAGATTCAGctttaatagtgttttattttgagctgtgtgtgttttatgtgcaGTCATGTGATCTgtctctcctctgtgtgtgtgtgtgtgtgcgtgcagctGTGCGTCCGGTGTCTCTCTCTCTGACCCCGAGAGCATCAGTATCGTCTCTGAGGAAGAGCTCCAGCTCCACACTGCCCTCCTCAGCCTCCTCCAGGAACTACAGCCCGTCCTCAACAGCAGcaaagagaactGCTGCTGGATCCTCCAGAGAGCCCCCGAACAGTAAAGCtaagagcagcagcagcaggaaaCCGCTGGAGAGCAAACCAAAAGATGGAGGTGCAGCTGCTGCAGATTTTCCTGAGGCCTCAGTGCAGAAGAAGGACTGGATCAACTGAGGTCTCCCCCTGTCCGGTCCTCAAGAGCCCCCTCAGATCCCCCAGTCAGTACTTCCAGATCTGCTACTGACTGATGACAAGTGTTCTGGAGGATGAAGAGCGCCTGACTCTGGAGCAGGACTACATCAGAACAgattcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgtgcatgcgtgtgtgtatgcgtgcgcgtgtgtgtgcacgtgtgcatgcgtgtgtgtgtgtgtgcctgtgtgtgtgtgtttgtttctgctgTGTTGTAGTTTAGAAGCTCCAGCATCAGGTGACTATTACCTGGGTCTATCataagagatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgctgagaGAGTGTTTTCTTCATGGACAGCTCCACGCTAAGAGGAGCTTTAGAGATATTAGTGATTTCTGCATGTAAAGCTGTTTAGTGGCTATAAACTGTATTTGTATCTAAGTCTGGCGGCTGTTTTGGATGACATGACAGGATTCAGACGTCCTCATTAAAGTACTGAATAGTGGATTAGTATGGGTCACACAATAATCATAGCGTAGTACCgttttgaatgtgtttgtgtgtattcatACATTAGACTGTGTTTTGATTATTTATCTTTCTCTAAGGAGCATAATTAAGATCCTCTATTTTTCACCATGATTTCTAGAATAAACAATCTAAAATGTCA

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006897 endocytosis biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0015893 drug transport biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0031045 dense core granule cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036529 True 2044 lncRNA 0.42 4 54483765 54488224

Neighbor

gene id symbol gene type direction distance location
XLOC_018524 evlb coding downstream 21214 54437053 ~ 54462551 (-)
XLOC_018523 yy1b coding downstream 48478 54419592 ~ 54435287 (-)
XLOC_018522 entpd5b coding downstream 102731 54360268 ~ 54381034 (-)
XLOC_018521 NA coding downstream 138353 54339711 ~ 54345412 (-)
XLOC_018520 NA coding downstream 212310 54270891 ~ 54271455 (-)
XLOC_018526 CABZ01118770.1 coding upstream 18204 54506428 ~ 54508650 (-)
XLOC_018527 ppp1r35 coding upstream 23843 54512067 ~ 54522660 (-)
XLOC_018528 zgc:153012 coding upstream 37180 54525404 ~ 54564018 (-)
XLOC_018529 NA coding upstream 98415 54586639 ~ 54610803 (-)
XLOC_018530 NA coding upstream 274297 54762521 ~ 54772668 (-)
XLOC_017928 CU539064.1 misc downstream 44430064 10053405 ~ 10053701 (-)
XLOC_018514 NA non-coding downstream 310466 54164885 ~ 54173299 (-)
XLOC_018513 NA non-coding downstream 329562 54149197 ~ 54154203 (-)
XLOC_018511 NA non-coding downstream 432271 54050432 ~ 54051494 (-)
XLOC_018533 NA non-coding upstream 400233 54888457 ~ 54891115 (-)
XLOC_018534 CR376838.1 non-coding upstream 505133 54993357 ~ 54998597 (-)
XLOC_018535 NA non-coding upstream 559292 55047516 ~ 55049037 (-)

Expression


Co-expression Network