XLOC_018533


Basic Information

Item Value
gene id XLOC_018533
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54888457 ~ 54891115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037027
TGTGTCCTTGCTCCGCCCCTTTTATGGAGGACTCATCAAGAGGTGACTGGTGTGAACTTGACGCAGGGTTTCCCAGAATTCATTTCGCACCAACCGTTCAGTTGCAGTGGCGGAGGAAAGATCTCACAATTACCCTTGCAACAAGACATGTGGGGCGTTTTCCACTCATTTGTGGAGCATTTTGTTGGACAACTGAAGAAACAATTCTTAACTGAATGGCGGGCTGCCAATGAGACCCTCTTTACAGAGACGCAACTCCTCCAGGAGTGGATGTGAGAGCTTAGGGACCCACCAACTGGGAAAGAGGTAGAGGCTGGGGGAGTGACTGCAGCCACCTGGCGGTGCTGCATGCTGCATTCCTGGGCCAGCACTCAATCAGTCCACCCCTTGTTTAAGCAGCAAACCTGTCTGCCACTGCAGGTGGCTCAGTCAGTACACCAGCTTCTACACTAGTGAACTACCCAGGAGCAGTCAGTACAAAAGAAGACGGCCAAGAGATAACCAGGGCCTCCTGGATGATTTGGAGGAGCAGGCAGAGAGGGAGGAAGAAAGGGAGAAACAGACAGTGGCAAAAGAAGAGGAAAGAGAGAAGAAGAGGCAGCAAGAGCCAGAGCGGAGCGTTACctctcactttttaaaa
>TCONS_00037028
GTGTATTATGTtgagcgcatttgagcatcacattttatctgcacatttattgaatggaaatgtttctcaTTGGTGTATGCatattcatcttcagatggcgtCTTCATAGCAATGTGTGCAGTTGATCACTCCGATTACACTGGGAAaaccggcgaccgctgcaaattgagCTTTAATGTTGGGCTGGTCAACTGCAGGGTATGGAAagcttatatacctgctagacatgcagataATCCCGTCACATACAGCTGCTATTGCACAGCTCAAACACTTTACTCACACAGGAAATGCACGCacaccagacatgaagttggcgtagaCCAACACACGTTCTCATGTTCATTTCAttattagtaaatccaaacgttagggtgaaacctggcgtacgcaaaggtTTTGTGCatatgcagcgttgatacatgaggcccctggttttTTGGTTGATATTAATGTTTCATGTTTATTATTTGGCATTGCTAGTTATTGGTATTTTCactaaggctgtttctcaatatgcgtttgtacttgtgttctgtgtcctcgtgaaacgtcatcaaccgtcgccAGAGCACTGGTCCAATTCAAAGTTTGcatcttgccaagtacagatTTAATCCCCGGATGTGTCCTTGCTCCGCCCCTTTTATGGAGGACTCATCAAGAGGTGACTGGTGTGAACTTGACGCAGGGTTTCCCAGAATTCATTTCGCACCAACCGTTCAGTTGCAGTGGCGGAGGAAAGATCTCACAATTGTAAGTTGTAATTTTTGAAGTATTATTGTTCCTGTGTGACAAAATGTAGTTGTAAGAGTTTATCAGTGAAATTATGCATTTTTTCCATACAATTTTGCGGATTCTCTATCTATCGCATATATTAGATACCGTAATGTTACCTTGGCAAAAAGGTATTTTACCGTTGTCTCTTtgatttctgcagtggttttaACGGTTGACAGAAATTATATTCTATGTAACCGGTATCTGCTGGGCTTTGGATAAATGTACTAATTGTATGATCCCTGCAAACCCTGAGGGCAAAGTTAAGTTTCCTTACATTATACGCTTATATAACAGAAATGTAAACCTGGACcacaaaaacagtataaaaagtCAATTAGTTGTGTGAAAAGCTTTTCATTGATATGTTTTGTGATAGGacaacatttaaaataagaatatCTGAAAGTTTGTAGTTTgaggattaaaataaataaatgaataaaacactgAGAGAATCGTCTTTTTAAAGCTGCCCAAATTAAGATCTTAGCAATGGACATTACTAAACAACAATTATGCTTTGATTTTGATTTGTTTGATGAATTTTTTACTGTTCCCTCAAATAGACCCTTGCAACAAGACATGTGGGGCGTTTTCCACTCATTTGTGGAGCATTTTGTTGTACGTCTAACagatttttttgtatgtattattttttcgCCAACTTCTGTCAGAATAGTAATATTGTTCATTACAAACTTgtatttactcaatattttaatCAAGGGACAACTGAAGAAACAATTCTTAACTGAATGGCGGGCTGCCAATGAGACCCTCTTTACAGAGACGCAACTCCTCCAGGAGTGGATGAGCTTAGGGACCCACCAACTGGGAAAGAGGTAGAGGCTGGGGGAGTGACTGCAGCCACCTGGCGGTGCTGCATGCTGCATTCCTGGGCCAGCACTCAATCAGTCCACCCCTTGTTTAAGCAGCAAACCTGTCTGCCACTGCAGGTGGCTCAGTCAGTACACCAGCTTCTACACTAGTGAACTACCCAGGAGCAGTCAGTACAAAAGAAGACGGCCAAGAGATAACCAGGGCCTCCTGGATGATTTGGAGGAGCAGGCAGAGAGGGAGGAAGAAAGGGAGAAACAGACAGTGGCAAAAGAAGAGGAAAGAGAGAAGAAGAGGCAGCAAGAGCCAGAGCGGAGCGTTACctctcactttttaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037027 False 640 lncRNA 0.52 4 54888457 54890490
TCONS_00037028 True 1959 lncRNA 0.41 2 54888457 54891115

Neighbor

gene id symbol gene type direction distance location
XLOC_018531 CABZ01037174.1 coding downstream 19451 54829098 ~ 54869006 (-)
XLOC_018530 NA coding downstream 115789 54762521 ~ 54772668 (-)
XLOC_018529 NA coding downstream 277654 54586639 ~ 54610803 (-)
XLOC_018528 zgc:153012 coding downstream 324439 54525404 ~ 54564018 (-)
XLOC_018527 ppp1r35 coding downstream 365797 54512067 ~ 54522660 (-)
XLOC_018534 CR376838.1 coding upstream 102242 54993357 ~ 54998597 (-)
XLOC_018535 NA coding upstream 156401 55047516 ~ 55049037 (-)
XLOC_018536 CT027638.1 coding upstream 277885 55169000 ~ 55169889 (-)
XLOC_017928 CU539064.1 misc downstream 44834756 10053405 ~ 10053701 (-)
XLOC_018525 NA non-coding downstream 400233 54483765 ~ 54488224 (-)
XLOC_018521 NA non-coding downstream 543045 54339711 ~ 54345412 (-)
XLOC_018520 NA non-coding downstream 617002 54270891 ~ 54271455 (-)

Expression


Co-expression Network