XLOC_018536 (CT027638.1)


Basic Information

Item Value
gene id XLOC_018536
gene name CT027638.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 55169000 ~ 55169889 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036359
TCGGCAGAGTCAAGCTGTTGAGCTTGACTCTAGTCTGGCACTGTGAAGAGACATGAGGGGTGTAGAATAAGTGGGAGGCCCTGGGGCCCTCGGGCCCAGCGGGCGCCGCCGGTGAAATACCACTACTCTTATCGTTTCCTCACTTACCCGGTTGGGCAGGGAGGCGAGCCCCCGGCGGGCTCCTGCTTCTGGCGTCAAGCGCCTCGGGGCCCATCGCGGTCCCGGGCGCGACCTGCCCCGGGGACAGTGGCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGCGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTATGAGTACGGACCGTGAAAGCGGGGCCTCACGATCCTTCTGGCTTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGTCCGTGTTGTTGCAATAGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGCGTGTGCTTGGCTGAGGAGCCACTGGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCTAAACGTAACGATACCGCAGCGCCGCGGGGCTTCGATTGGCCTGGGATAGCCGGCCGGGGTTCGCCCTCGGTCGGTGCGGAGAGCCAGCCGTGACGGGAC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0010032 meiotic chromosome condensation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036359 True 890 lncRNA 0.58 1 55169000 55169889

Neighbor

gene id symbol gene type direction distance location
XLOC_018535 NA coding downstream 119963 55047516 ~ 55049037 (-)
XLOC_018534 CR376838.1 coding downstream 170403 54993357 ~ 54998597 (-)
XLOC_018532 si:dkey-15f23.1 coding downstream 244407 54874121 ~ 54924593 (-)
XLOC_018533 NA coding downstream 277885 54888457 ~ 54891115 (-)
XLOC_018531 CABZ01037174.1 coding downstream 299994 54829098 ~ 54869006 (-)
XLOC_017928 CU539064.1 misc downstream 45115299 10053405 ~ 10053701 (-)
XLOC_018530 NA non-coding downstream 396332 54762521 ~ 54772668 (-)
XLOC_018529 NA non-coding downstream 558197 54586639 ~ 54610803 (-)

Expression


Co-expression Network