XLOC_019067 (rbm11)


Basic Information

Item Value
gene id XLOC_019067
gene name rbm11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 34976600 ~ 34989915 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037810
ACTTTTTAGGGGCTATTGCGTCACCTTGTGGTTGACCGCGGCACCGCGTTGTCGCAATTCAGTTTTGCATCACGACAAGTCAAACCCATTTCTCTCAAAAGAGAGCATGACAACCTAAAACCACCCCACAATATTCACGTTTCAACTCTTTTGGCAAGAGCTTTAAAGAATGTCGAGGCATTTATCCTTATCAAACAAGACCATCATTGTGGGAAACCTCCACAGATGTGTGACGGAGGAGATTCTGTTTGAATTGTTTCTTCAGGCTGGACCGGTGGACAAGGTGCATATATCCAGAGATGGACAGCAGTCGCCTTATGCATGCGTTTATTATAAGCATGCCGAAGCTGTTCCCTATGCAGTTGAACTTCTCAATGGAATCTGGCTGTATGGGCAACCAATCAAGTTACAGTGTAATAATGGAGGCCATTATCATAGGAGTGACGTGTTTGCATTCCACATGGAGAATGGACTGATAACAAACAGTGCTGATTCTGCTTATAGGGATAATATGGTTTCAAATTTAAATGGGTGTCCAGGTGTGGAGAGTCATTCTAATGGTTGGAGTGACATGGtaagtaaaaataacaataaaaaaaaaacgctttttCTTCATATCAGCAAATTGACCAACAGATAACTACATGggaacatataataataataataataaaattgaattgtTTTAAGGTGTACAGCAGACCTCTGGATGCATGTTCTCCAGCTGTGTGGTACTGTCCTCCTCTCCAGCAGTGGATGGATTCTGGATATCCTCCTTGGACGTCCTgcctgaatgagaatgtgttgCTCTGTAGGTCAGCAGGTGCCAAAGTGAGTCAAATTTAAACTTAAGAGGATAAAAAACTATCATAGTCCTAACCTCAACCCTAACCCtaccataaaaaaaaacaaaaaaacaaaatgtaatccTGATagcaaaaacaaactgaaatcCTATCTAAATCAAGATGAACATTTCATTTTCAGAGACGACCATACGGTGGGCACTCTTCAAACACCCCGACCCCTCTTACACCCACACATGCACAGTATTTTACTAAATCAGACTGTACGCTGTAAATTATTAATATCTGCAAATGCTCTAATAAAGCCATATAAATGCATCTTACttgttatttgtgttttgctgATAAACTTGACGTGATTAAAAAGTCAACGACACAGTGATTGATTGGtcattttgtttttctacaaAGACATTTTTATAGTGGCAAATAAAAGAGTAATGTCACGCAAAACATCACATTTATATTGGAGGATAATTTATAGTCAGTTCTCAAGGGCGACGTCAGTTCAATCGAGTAACCTGCTGCGGGTGAAACAGCTTTAGCTTTAAATGGTATGATAAGACGCAATCACTTCAGACTTtagactttttttaaagatttattttgctAGGTACAGGGGTAAAATCAATTTTAGCTGGTTCTGGTATTGATTGAtcaattcataaaaaaatactaaagttAAACCCAGGTGAGCTCTGGAAAATTTTGTtgaaacgtttaaaaaaaaaaaaaaattatacttttaatCAGCAAGGATgtaataaattgataaaaaagtGATACATTGATTGTGGGTTGGATTTCCAGGGAACGTAATAACTGATtgcattcagtgtaaattcacttcaGATAAAAGTCAAATGCATACAAATACAAAAGATTGacctttcatatttatttattatttatgtatttattacattttcatgGTTTTAAATCGTGGGTTCCACAAAAAGAAATATGAAGAAGCATTATTTTCAACCCTGATAATAACAGATATTTCATGATCACCAAATTCCAATTTTCAGAACCACAAATCTCACTGTTCGGATCATGTGATGGTTTTTagtcacggatcggaccattttcGGATCAGCctaaaaggggaggagacaaatgtaatttgctttccatttattacaaaacaacACTGCAataaacttttggttttaacaaagaGAAATTAGAAcctgtaattatattaaaaaataaaatgtagaaataatcagctgaataaataaattgtaaaatgttcagtactgtgaaaaattctctGTTACTCCTACTGTTGCTGATattgctaaatgtataaatccaACATTATAATTTtcacaacccatatttatttttagtcttatttttaataattcagttattcactcataaaacttcatgtttcattaatagatggatcatttttgaagaactatttagtggcatatttttgatggctggttgtggCCACCTATAATGGCTAAATAATTTATAAACATCAGTAATTTTATCTAAACTgctatcccagtacttctgttaTTTGACTcgttgtaacttcataactaactcaaaagtcTAAAGACTCAATCCCTTTCTTGAAGTTTACACAGTTTCTTTGAAGAAGTTTCTTTGAAGTtttctaaaaaaaggaacaaaatcattaaaaaaaaatatctgatgaTAAATCATACTCAACATTTACcattttaggtaagttaggattacctaaaatgatttacatttgctaaatgcctgaataatgagatacattttttttggagaattttatattaatttctagACTGTTAGAAGTTTATATACaattccttggtattttttatttatttttttgctttgcttttaaaatgtataactttggtcaaatgttttgggtatccttccacaagcttatcacaatagtttgaaggaatttcggcccattcctcctgacagaattggtatAACCGAGTCAGATTTTTAGGATTTGCCTACACATTatctataggattgagttcagggctttgtgatggccactccaaaataatcactctgttgtccttaaagcacttAATTTGGCACTATGCTCatggtcatggtctgtttggacccatttgtggccaagttttaatttcctggctgatgttttgagatgttgtttcagtatttctacataatgttctttcttcatgacgCCATCAatactgtgaagtggaccagtccctcctgcagcaaaacagccccacaacatgatgctgccacccccatgcttcacagttgagatggtgttcctaggctttgtaagctttcccctttgtccttcaaatgtaacactggtcatttcGGCCAAACatttcaatcttagttccatcagaccacaggacatgtctccaaaaattattctttttcccagtgtaatatAGCAAAtagtaatctggcttttttgttgattctggcttgttgatttccccatgttgtcacacaaagAAGCactgtgtttgag
>TCONS_00037811
GACAACCTAAAACCACCCCACAATATTCACGTTTCAACTCTTTTGGCAAGAGCTTTAAAGAATGTCGAGGCATTTATCCTTATCAAACAAGACCATCATTGTGGGAAACCTCCACAGATGTGTGACGGAGGAGATTCTGTTTGAATTGTTTCTTCAGGCTGGACCGGTGGACAAGGTGCATATATCCAGAGATGGACAGCAGTCGCCTTATGCATGCGTTTATTATAAGCATGCCGAAGCTGTTCCCTATGCAGTTGAACTTCTCAATGGAATCTGGCTGTATGGGCAACCAATCAAGTTACAGTGTAATAATGGAGGCCATTATCATAGGAGTGACGTGTTTGCATTCCACATGGAGAATGGACTGATAACAAACAGTGCTGATTCTGCTTATAGGGATAATATGGTTTCAAATTTAAATGGGTGTCCAGGTGTGGAGAGTCATTCTAATGGTTGGAGTGACATGGTGTACAGCAGACCTCTGGATGCATGTTCTCCAGCTGTGTGGTACTGTCCTCCTCTCCAGCAGTGGATGGATTCTGGATATCCTCCTTGGACGTCCTgcctgaatgagaatgtgttgCTCTGTAGGTCAGCAGGTGCCAAAGTGAGTCAAATTTAAACTTAAGAGGATAAAAAACTATCATAGTCCTAACCTCAACCCTAACCCtaccataaaaaaaaacaaaaaaacaaaatgtaatccTGATagcaaaaacaaactgaaatcCTATCTAAATCAAGATGAACATTTCATTTTCAGAGACGACCATACGGTGGGCACTCTTCAAACACCCCGACCCCTCTTACACCCACACATGCACAGTATTTTACTAAATCAGACTGTACGCTGTAAATTATTAATATCTGCAAATGCTCTAATAAAGCCATATAAATGCA
>TCONS_00037812
CATGGAGAATGGACTGATAACAAACAGTGCTGATTCTGCTTATAGGGATAATATGGTTTCAAATTTAAATGGGTGTCCAGGTGTGGAGAGTCATTCTAATGGTTGGAGTGACATGGTGTACAGCAGACCTCTGGATGCATGTTCTCCAGCTGTGTGGTACTGTCCTCCTCTCCAGCAGTGGATGGATTCTGGATATCCTCCTTGGACGTCCTgcctgaatgagaatgtgttgCTCTGTAGGTCAGCAGGTGCCAAAAGACGACCATACGGTGGGCACTCTTCAAACACCCCGACCCCTCTTACACCCACACATGCACAGTATTTTACTAAATCAGACTGTACGCTGTAAATTATTAATATCTGCAAATGCTCTAATAAAGCCATATAAATGCA

Function

symbol description
rbm11 Predicted to enable single-stranded RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM11 (RNA binding motif protein 11).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-091204-317 Predicted to enable single-stranded RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM11 (RNA binding motif protein 11).

Ensembl:

ensembl_id ENSDARG00000090202

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037810 False 3303 mRNA 0.35 4 34976600 34989915
TCONS_00037811 False 900 mRNA 0.42 5 34976708 34987736
TCONS_00037812 True 393 mRNA 0.45 4 34981263 34987736

Neighbor

gene id symbol gene type direction distance location
XLOC_019066 NA coding upstream 32670 34929584 ~ 34943930 (+)
XLOC_019065 cdc23 coding upstream 95676 34849406 ~ 34880924 (+)
XLOC_019064 wdr55 coding upstream 133596 34814444 ~ 34843004 (+)
XLOC_019063 chm coding upstream 182691 34686764 ~ 34793909 (+)
XLOC_019062 trpc5b coding upstream 764942 34132747 ~ 34211658 (+)
XLOC_019068 tmprss15 coding downstream 2635 34992550 ~ 35041299 (+)
XLOC_019069 poglut3 coding downstream 51484 35041399 ~ 35056093 (+)
XLOC_019070 ubtd2 coding downstream 225895 35215810 ~ 35281609 (+)
XLOC_019071 il12bb coding downstream 299554 35289469 ~ 35302253 (+)
XLOC_019072 rars1 coding downstream 337413 35327328 ~ 35378321 (+)
XLOC_019059 NA non-coding upstream 890375 34078735 ~ 34086225 (+)
XLOC_019057 BX005313.1 non-coding upstream 1211355 33756110 ~ 33765245 (+)
XLOC_019056 BX005313.2 non-coding upstream 1329668 33637083 ~ 33646932 (+)
XLOC_019054 NA non-coding upstream 1510793 33464424 ~ 33465807 (+)
XLOC_019073 BX247879.1 non-coding downstream 532787 35522702 ~ 35522834 (+)
XLOC_019074 NA non-coding downstream 907683 35897598 ~ 35899398 (+)
XLOC_019075 NA non-coding downstream 911002 35900917 ~ 35905585 (+)
XLOC_019076 NA non-coding downstream 914470 35904385 ~ 35906582 (+)
XLOC_019077 LO018617.1 non-coding downstream 1201415 36191330 ~ 36191453 (+)

Expression


Co-expression Network