XLOC_019095


Basic Information

Item Value
gene id XLOC_019095
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 38211618 ~ 38227516 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039453
CACAAAGTTGCCTCTTGTTTGTCAAAGACGTTTGGCAAACAGCCATTTTTATATTAGTGACATTAAATGTGAGCTAATTAGCACCTGATGTTCTCTTCATTAAGATCACTCACGCAGTCCCACTGAGATACTCTGATCACATTACAGATTGTCAACATTATGCCGAGCTGCTTAATGAAGACCCTCTTCACCACACAcagacacgcgcacacacaaacacacacaaacatgtaaacaaacacagaTTACGTCACGCTGCTGCTTTGCCCTGCTCCTTGAAATCGTGATTTAAATGAGAGACATCACAGCTTTGTCGGATCTAAACGGCAGCATCGGCGCATCCTGAAGCATCGAATTGAGTTTGAAAACATCCCAGCGTATGATCGAACGCTTCAAAACAACAGCTTGTCTTAAATATGGCCGCAGACGCAGATGGAGATGGAGCGGCTCTTTGTTCCAGCACAGCGGGCATCTGATGTTACATAAGTTCGACTCGACACCTGCACCGGCATCCCATCAAGCAAGATCCTGCTCCGGCACAAAGCCGAGGAAACATATTTATTTCATCGCAAGATCAAGCCCTGTCCCTGTAGTAAAATTCCCATACAGTGTCAGCTTCTGAAGATGCATTTTTCATAGGGCGCCATGTGCCTTTCTGTCACTCACAGCTGCAGGGCATTGGAACTGCAGGATTTTATGAAGGGAGGGCAGAGGGAGGACGAAAAAAGGGATAGATTAAATATTTAAGTCTCACTCTTCCACAACACCAGGAGCCACTTGTTCGGCAGGATCGAAAGAAAGGGGTCCGAAGCCCCCAAGATCAAGGGTGGGCGCCGGGGTCACTGCCTTGTGGACTTTGGAGCTAGAAAATCACGATGTCTGTCCGTCAACCCAGGCCTAATGATCTCCTGCGACGTCATTATTATCCTCTGCGGTTCGGGACGGCCAAAACGAAGAACCTGGTTGGGAAGGTACAGCGGATCAACATGTGCTGGTGAATTGTAAATAGAGGCCAATGTAACTtgtcacatcacacacacacacaacgatcTGTCAAAACAGTGACACCAGACTCACTGAGCATCATCAAAAATGAATCGCTTCGTGAGCTTGACATGCTGCCATACTAATGCGAGTgtgagtttacacacacacacacacacacacaccagtgctCGGATAACACTAGATGGGGCTCCAGCTGTGGCTTGGTGGGCTTATATTCAAAGTAAATCTAAC
>TCONS_00039454
GGCAAACAGCCATTTTTATATTAGTGACATTAAATGTGAGCTAATTAGCACCTGATGTTCTCTTCATTAAGATCACTCACGCAGTCCCACTGAGATACTCTGATCACATTACAGATTGTCAACATTATGCCGAGCTGCTTAATGAAGACCCTCTTCACCACACAcagacacgcgcacacacaaacacacacaaacatgtaaacaaacacagaTTACGTCACGCTGCTGCTTTGCCCTGCTCCTTGAAATCGTGATTTAAATGAGAGCAATCCGCCTAAACAGACTGTTGACGCCTGGCTGGAGGTGAAATGGTTGCTGGCAGAAAGAAGGATGGGCTTGAATAAAAGGTGTGTCAGTGAACCACACAAAGCTGACAACCAGCAgctcagcatatgttttattggTCCCAAACTGTTTTTCCCTCaccattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattcaTTGAAGTCACAAGCTGCACATTTAACCTCATTCTGTTTCCTTTGTGTCCACACTCAGTAGGGCTCTTCATCAATCCCTCATTATTAAGCCACTAGTGTCGTTAGCCAGCCATCAGATGATCAATAAATGAGCCGTGTCCACGGGAGGCTCGCAATCAAATTGTCTCTTGAAGAAAACAGATGAAACTGATTTCACCAGAAAGTGCTTTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039453 False 1239 lncRNA 0.47 2 38211618 38221666
TCONS_00039454 True 707 lncRNA 0.44 2 38211651 38227516

Neighbor

gene id symbol gene type direction distance location
XLOC_019094 klf8 coding upstream 100400 38033226 ~ 38111218 (+)
XLOC_019093 cldn2 coding upstream 202111 38002879 ~ 38009507 (+)
XLOC_019092 NA coding upstream 335448 37763000 ~ 37876170 (+)
XLOC_019091 NA coding upstream 541740 37668485 ~ 37669878 (+)
XLOC_019090 amot coding upstream 660764 37477001 ~ 37550854 (+)
XLOC_019096 zgc:158291 coding downstream 85033 38312549 ~ 38315241 (+)
XLOC_019097 AL935199.2 coding downstream 341769 38569285 ~ 38569401 (+)
XLOC_019098 NA coding downstream 358167 38585683 ~ 38587074 (+)
XLOC_019099 AL935199.1 coding downstream 406780 38634296 ~ 38635108 (+)
XLOC_019100 rbmx2 coding downstream 411463 38638979 ~ 38647743 (+)
XLOC_019081 NA non-coding upstream 1609819 36570875 ~ 36601799 (+)
XLOC_019080 NA non-coding upstream 1678378 36532783 ~ 36533240 (+)
XLOC_019079 CR352267.1 non-coding upstream 1723440 36488062 ~ 36488178 (+)
XLOC_019105 NA non-coding downstream 646374 38873890 ~ 38927192 (+)
XLOC_019106 CU463284.2 non-coding downstream 733401 38960917 ~ 38972423 (+)
XLOC_019107 CU463284.1 non-coding downstream 749076 38976592 ~ 38990703 (+)

Expression


Co-expression Network