XLOC_019100 (rbmx2)


Basic Information

Item Value
gene id XLOC_019100
gene name rbmx2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 38638979 ~ 38647743 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037855
GGAAGACAATGGCACCACGTGTGGACTGCGAAAAAGAAACTATTTCCGGAGTGACTTCGATTCACCAAAATGAATCCACTGACCAAAGTGAAGCTGATCAATGAACTGAATGAAAGAGAAGCTCAGCTGGGCATCAAAGAGACTGTGTCCTGGCATTCAGTCTATAAAAACAGCGCCTGGGTCTTCATCGGTGGATTTCCATATGAGCTGACAGAAGGAGACATCATCTGTGTTTTCTCTCAGTATGGAGAGATTGCCAACATCAACTTGGTTCGAGATAAAAAGACTGGCAAATCCAAAGGATTCTGTTTCCTGTGCTATGAAGATCAGAGGAGCACTATTCTGGCTGTCGATAACTTTAACGGAATCAAGATTAAGGGCCGGACCATACGTGTGGACCACGTAGCGAATTATCGACCACCGAAGGACACTGATGACATTGATGACATCACTAAACAATTACGCGAGGAGGGATGTGCTCCTAAACCAGTTTCATCCTCTGAGGAAGAGTCTGCGGAAGAGTACGCTGTACCTGTGAAGAAGCCTAAAAAAGATAAAaaggagaagaagaaaaagaagaaggagaagaaagagaagaaaaaggCTCTGAAGGAGGAGAAACGTGAGGGGCGCTCTGAAAGCTCTGCATCTTCTCCTATCAGAGTAAAGAAGGAGAAGGAGGATGTGGCGTATGAGAAATACAGCGTGAAAGGACCTGCGGCTAATAGAAGAGACAGAGCAGATGAGCAGGAGCAGTTAAAAgagaaggaaagagagagagaagagggcAAGAAGACAGACAGAAGACATGCAGAAACAcagcagagagaaagagacagagaaggagagagagagggggacaAAGAacgagagagagacagaggaagACAGAGAGACGGGGAAAGACAACGAGAGAGAGATGGAGGAAGACAGAGAGATGGGGAAAGAGACCGAGAACGAGAGAGGGACGGAGGAAGACAGAGAGATGGGGAAAGACAACGAGAGAGAGATGGAGGAAGACAGAGAGATGGGGAAAGAGacagagaacgagagagagacgGAGGAAGACAGAGAGATGGGGATAGAGACCGAGAACAAGAGAGAGACGGAGGAAGACAGAGAGATGTGGAAAGAGACCGAGAACGAGAGAGAGACGGAGGAAGACAGAGAGATGGGGATAGAGACCAAGAACAAGAGAGAGACGGAGGAAGACAGAGAGATGTGGAGAAAGTCAAAGAACGAGAGAGAGATGGAGGAAGACAGAGAGATGGGGAGAGAGacagagaacgagagagagacgGAGGAAGACAGAGAGATGAGGAGAGAGTCCGACAACGAGAGAGAGAcagggacagagagagagacagaggtaATGGCAAACACAGAGATCACAGTCGTGAAAGAGAACACAGGCGAAACTGATCAAACTCAGTagtttacattttcttttgatgtaaaaaatattcatgtttttattgtattgtactacaaaaatgtaaataaatgtttcacaCTTTTTTTAA

Function

symbol description
rbmx2 Predicted to enable RNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Is expressed in blastodisc and central nervous system. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050626-88 Predicted to enable RNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Is expressed in blastodisc and central nervous system. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2).

Ensembl:

ensembl_id ENSDARG00000044380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037855 True 1523 mRNA 0.46 6 38638979 38647743

Neighbor

gene id symbol gene type direction distance location
XLOC_019099 AL935199.1 coding upstream 3871 38634296 ~ 38635108 (+)
XLOC_019098 NA coding upstream 51905 38585683 ~ 38587074 (+)
XLOC_019097 AL935199.2 coding upstream 69578 38569285 ~ 38569401 (+)
XLOC_019096 zgc:158291 coding upstream 323738 38312549 ~ 38315241 (+)
XLOC_019095 NA coding upstream 411463 38211618 ~ 38227516 (+)
XLOC_019101 rab24 coding downstream 85202 38732945 ~ 38739728 (+)
XLOC_019102 heatr6 coding downstream 97351 38745094 ~ 38795137 (+)
XLOC_019103 hnf1bb coding downstream 170042 38817785 ~ 38840667 (+)
XLOC_019104 ddx52 coding downstream 207808 38855551 ~ 38869404 (+)
XLOC_019105 NA coding downstream 226147 38873890 ~ 38927192 (+)
XLOC_019092 NA non-coding upstream 762809 37763000 ~ 37876170 (+)
XLOC_019091 NA non-coding upstream 969101 37668485 ~ 37669878 (+)
XLOC_019106 CU463284.2 non-coding downstream 313174 38960917 ~ 38972423 (+)
XLOC_019107 CU463284.1 non-coding downstream 328849 38976592 ~ 38990703 (+)
XLOC_019108 NA non-coding downstream 357709 39005452 ~ 39021461 (+)
XLOC_019112 NA non-coding downstream 644377 39292120 ~ 39300023 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location