XLOC_019448 (whrna)


Basic Information

Item Value
gene id XLOC_019448
gene name whrna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 13979033 ~ 14175838 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038346
CCCGTCCTGTGTTGTTGGTTACTAAGCAACTTACGCGCGCCACACGAGCTGCGTCATTTCCTGTGAAGGGACGCGTTGGAGAGCCAGTTCAGTCGATCCCCTCCGACAGCTGAAGGCTACACGACATACGCGAGCTCCGTGGTGCTTTACTTTGTTCCTTTACGCACCGACGCGACGAATAACTTTACAACCTGTTTGATTTCTGTCTGTGGAATACATCCAGCGCACTTTCCAAGAGACTAAAGCCCGTTTCAACTTTCTGATTTGAGCGTGCCAGATGGAAGCAACTTTGCATTTTAGTTTGGGTGTCATATGTTACAAATACTGGACGAGTGGATTACTGAATGCGTAACCGGTGCTCTACTTTAAAAAACTAATCAGCGGGAACGCGTCCGTGTGATTATGGTGGTTGTAAAGCTTTGGATTTCTGGGCAGAAATCCTGAAGTGCCTCATAAGGGATTCACTGTTGACGGCAGAGACATTGGAGAAGACGCGCTGGCCACTTGACCCTTTTTTCGTGAGCACGAGACGCACCGGAGCGCGCCGCTTTCTGACGCCGTTATTGGGAAGGCATTACAGGTCCTCTGTGACCCGTTTGGCGTGAGATTAAGCATGACAGCGAGCATCGAGGCATCGCAGTGCCATGCGGCGCTCCGCAGACTCCTGTAGACTCGGTCCCGGTGGTACTGCAATGCTCGCCGGGCCCCTCCACTTCCGCGTACTGGCTCTGTGATCCAGGCAAAGGGCGCGAGGATGAGCACAGACCTGGAGCGCCTGTCGCTGAACTCTTCCTCGGGGAACTCCGTGGCTTCCAGCGCGCGTTCCCTTTCCGCCAACGTCAAAAAGCTTCACAACGCGCTCAACCTGCTGCTCAGCGACCTCGAGAGAGAGCAGTTCATCCACTGTCTCAACGTGTACCACTCCAAGCGCAATGTCTACGACCTGGTCCAGACGCTTAAAGTCATACTGAACGTCCCGAGCAAGCGTCAGCTCCTGCCCATGCTGCGGCTGGTCATCCCGCGCTCGGATCAGCTTCTGTTTGATCAGTACACATCCGAGGGGCTATACTTGAAATCCGAAATCCATGCGCGCAACGGAGACCCGGACGGTGCCCAGGAGGGTGCTAACTCGAGTCCAACACATGGGGCTAATTTCCCGGCGTCTCAAGTCGCTCTACGCGGGTCTCCTGACAGCATCAGCACCAGCAGCGACGGGACAGCGACTCTTATTCCTTTACTGGGGAGGAATTTCTTACCGGAGCCCCCTGGAGAGATCCGACAGGTGATCCTCAAGCGTCACAAGAGCAATGAAGGTTTGGGATTTAGCATCCGCGGAGGATCAGAGCATGGAGTTGGAATCTATGTTTCACTGGTGGAACCTGGATCACTGGCTGAAAAGGAGGGTTTGAGAATGGGAGACCAAATAATGAAAGTTAACGACAAAGTGTTTGACCGGGTCACGCACGCGGATGCAGTAAAGGTGCTGAAAGGCAGCAAAAAGCTCTGCATGTCGGTGCGTTCTGTGGGCAGGATACCAGGCGGTTATATCACCAATCACGTCTACACCTGGGTGGATCCTCAGGGGCGCAGTGTGTCTCCTCCACCCGACCTGCTGGCGGAGCATCGCAGTGCCACCCTGCGCAGGTCCAACAGTCAGGGCCGCAGTCACATGCAGCTACTGCAGGATGGAGATGAGAAGAAGGTAAATCTGGTGCTGGACGACGGCCGCTCTCTGGGTCTGATGATCCGCGGAGGAGCTGAATACTCTCTGGGTATCTACATTACAGGTGTGGACAGAGGCTCTGCAGCGGAGTGTGGAGGGATTAAGGTGGGAGATCAGATCCTGGAGGTGAACGGACGGAGTTTCCTCAGCATCCCGCATGATGAAGCGGTCCGAGTGCTGAAGTCTTCACACCACCTCATGATGACGGTGAAGGACGTGGGACGGCTGCCGCACACCAGAACTGTAGTGGGAGAAACTAAGTGGATCGCCAGTTCACAGATTTCTGACAGCTCGGCCAGCAGCAGCGTCACTGGTATCTCTCTGGACCAGGGAGCATCAACATCAGCAAAGGGGGGCTTTTATAAAGGTGTAGCGGGATCTCAGGTGACTCTGTCCAGTTTGGTGAACCAGAGCAGGGCCATGCTGGAGGAACAGGCCAGACATCTTCTGACCGAACCGGAGAGGCAGACCATGGGTTACTACATCCAGGAATATCGGGACGGGCACGTCGGTGTTGAGCAGCTCGTCATGGCTCTCTTTGAGCTCTTCAATACACACGCCAAGTTTTCTCTGCTGTCCGAGGTCAGGGGAATCGTGACCCCTCAGGATGTGGAGAAATTTGACGGTCTGGTCCTGAGACGAGAGATTGATGCCCTGAAGGCGAGACAGGGTGGGGGAGCAGGTTTCCAAGACTCCTTCTCCATGGTCTCGTATCCAGACACTTTGGCCTCCTCCTCCGCCAGCTTCATGACCAACACTACCCTCAGCTCCGCAAGGAACGACGGTGTGGCGGAGAATAACGGGGAACAGGGGTCTCTGGAGCACAGCAATGCCCTGCCAGACATCTCTCTGGATGAGGTTCATTCCACCTCAGATTCTCCTCCTTCCTTTAAACCTCCTCCTCCCCCAGGGCTCCAGCGGCGTCCCAGTCGAAAAGCCACGCTTAGCAAACGTCCCTCTTCCAGCTCTTCCCAATCAGGCCTGTACTTCACCGCTCCTTCTCGTTCCCACACCAGAGAGTCCAAACACCCTAAAGCACCCAAAGCTTTCATGTCTCCTCCTGGCACCCTCAAAATAGACGTCCCGGCATCTCAGCTCTCAGTCGTGAGTCAGCATCCAATCGGACCTTTCCCAAGAGTTCAGTCTCCTAATAAAGCGAAGCCTGCTCAGTCCTCATCTCCAATTCCTCCACCTGCACCGAATGTACCCGCTCCGCCCGGTCCGCCTCCTCCTCCGCCTCCACCTTTGCCTCCACCCTCTTGCCCGGATAAACCCACCCCTTCCTCCCCAGCGTCCAATCAGCATTTTGTGATGGTGGAGGTGCACAGGCCCAACGCAGAGCCCGATGTGAACGAGGTCCGGCCGCTGCCACAGGTTCGAGGAGGAACGTTATCACAGCTCTCAGACAGTGGCCAGACACTCAGCGAGGACAGTGGTGTGGACATACCTGAATCAGGACGTCTCAGTAAGGATACTAGCCCACGTCCCGCTCGCACCAGAGCCCCTCGGGATGGGCATGGAGGAGGAGAAACGTCTGCCAAACCGCCAGGTCTGTTGGAGCCGATGTCCACTTTAGTGAGAGTGGCCAAAAGCGCCAGTACACTGGGCATCGCGATAGAAGGCGGGGCAAACACACGTCAGCCCCTCCCACGCATCGTTACTATTCAGAGAGGCGGTTCAGCTCACAACTGTGGACAGCTAAAGGTGGGTCAGGTAATCCTAGAGGTGAATGGAGTGTCCCTCAGAGGAAAGGAGCATCGGGAAGCGGCACGTCTCATCGCCGAGGCCTTTAAAACCAAAGAGAAGGACTACATTGACTTCTTGATCACAGAGTTCAATGTGGCTCTGTAGGACCCCGTGATTAAAGAGCATTGGGATGGATCCGCAACACGTCTTGCCATGATTAACCTCCCAGAATCTTGATCCATGGCGCACTTCGTCTCATCCTCCTCTGTGATGTTTTGAAACCAGTCGCTGTTTGAAAGGCCATCCCGTGTGGATCAACCCCATCTTGACCTTTTAGATGGCAAATGCCAGGATAGAGCAGTTGAGTCTGTTCTGGAAGATTGGGCCATCTTTTCAGTTGGCTTATTCTATGTGAGATCCTATAATGAAATTTGGTCACCTGACCCCAAGAGACTCTTTATCAAGCTCGGATCTGTGTATTGTTTTTGATGCACAATACTGTTATCCTGGTGTGAGAGTTTGCGTGAACGTCATGGAAAtcatcattgtttttcttttttaattcatagCTATTTTATAAGAAATTGAtcaaatgtgtttaaatatatatatattaaaacgtTTAAGAGGTGGATACAACCACTGATTCCAGTAAACAGTGACAAACTGACCCATAGAGACCTGAACTAAAGTGCTTCAGTAAGCAGAACTGCTACAACATCTGtcattgtctttttttaaactagTCAGCCTGATTCATTTTTTTCTGAttattgttttgcagttttttttgcaTCATGCTGTAATTATTAAACCATGGCTATCAGTCATTAGGACAGAAATGCTGGAATCTTCAGAGATGGTTACTAGTGTGCAGCCTGCAGAGACAGTATAGGCTCTTGCTATTTGAAGATATCTCCAGGTGCAGAAAACATGTATCAGGGCTCAACAGTAAGGACGGCACTTTACATCTTTCAAAGTAGTATGTTACGCTTTCTGAAGGCCATTTCACACTAAGTATGATGATTTAAATGTAAGAATATTGCAGATGAATGATGTTTTCAAACCAAACGTGAAGTAATTGATCACTTTCGGTGCATTAGTGCTAATTAAGCGACATATCACAATTTTCAAAATGAGCAAACTGGAGAAAAAAACAATGCTTTGTCATGCTGTGCTTGATCATAGAGGATCTGTTATTTTGAAGAgtatcattagctatgtttccattcacctatttttatgcgctttttggatatgcgcataacaAATTGGTTGATGataacgtcatgatgcacatacattttgtaaatgcacattaaaaaattatactcataactgagtaggataagcTTTTGattcaataagaaaaaaataacaaattccagaatatgcgcattaaaaatgtcatgtgatgataaaaataatgtgTGATTAgtcaaaccagcaggctgaatgtattgtaaaacatctgaaatgttgttttggtcattctaaactgCCTTAACTATTTCAGTATGAGTGTTATAATATCATTATTACCTCCAGAATAGTCAAGTGCGTCTGTGCTTCatgtctcacgccttcaaacgctACCTCGCATTCATTGCATGTCTGCGTTGTCTTCTAAGGTGcaagtaaattattaaatgaagaaacaaTACACTTAGCTTCTCTTAATATAGCAAATTCCGtctttacttttgatatttggcaccaaaTAATCAAGAAGTGacagttttgttctctttgactcattggatgaaaaCACGTCTTTTATgtcatattccagttttgcgcataaatttaatttgcatttttgaatggaaacatagctattgccatcgtacacagtaaaaaaatgctaggttccacataattcattcatgttgacccaacacaaaccgattaagttaacttaacacttttaacaaatttatgtgaattgaacataaCAAGTTGTCCCAGGGAAATcttaagagttgtgttgtttccactcattttaattaagaagtttgaacaagcaaaaaaaataaaacatttgtgtaTGAAAGATCCTTCATTTGACAGTatttgattagaaaaaaaaaagagtagttttcttacagtattatattatgGGTCGGTCAagcttgaatctgattggttcaAATATGAGATAGCCCATTACAACATCAAACGAAAGAAAACCCAGAAAAACACTGACCAggcaaacaaatattttaaacgaAAGGATTAAGATCACAGACTCCATGTTTTTactataaaattaaatgtatttacactTTAAAGATCAATTAGTTGACctcaattattaaaattatgtaaacctgtttaaagtgattaattgacattgcttaaaaaagtgagtaaacctgtagcTTTAATATGATTAGGTAAATTAGCttatatgcataattataaaaaaaataagttaagctAACTTAACATTTGCAAGGTAGGTctactcaatttttttaagtcaacaaataatttttaaagtttaataaagtgtagttttattttaatccAGAAGTGTTTACAACGTTATTTATGGTTGTTTTGCCATTTACTGTTTAATAACTTTATAATTTCCAGATATTATTGACACTTCTTCTTAATTTACTAcaaaaatgctgggctccacacaattgatttgtgttgggacaacatgaaggaattaagtaaataaaaataaatgtatgtggattgaacataaaactattaagttgttgcaaaaaaaaaaaaaaaaacgctaaagaattgtgtttcagctcattttgaataagtagcaATAACAAACACCAAACATTACATTAATtacaaatacattatttattttattttcatacacGATTGTATGTATGTGACgacaacattaatattaataataaataatatattttaaaacagaaagtatacgtttatattatatttaaacaaataaattaaatacaaaagtaaatataaaattgtatgtGGTTGTGTGCATTTATGTATATTGAGTAGTTTAAACATGGCGGGAGAAATAGTATGAACTACAGACCTAACTACagcgaaaagaaagaaaaaaccttACTGTTGAGCTCTGATTTATCATTCACAGAGAAGGCAATCTGAAAATACATTGAGGCTGATGGACAAAGCAAGAAAACAGTATGATTCATTCAGCATTTAAAGTCAGCGTAGCAGCATGCTAGTCCCAAATTGTCAAAATCAATTTAAATCCAGTGAAATCAAAGTCAGAGTCTCCGATAGACTCCATGCATTCTTTTCAACTTTCTGCCTACGCCGAGCACACCAAAATCTTCAAACTACCACTATAGCATgcttcaaatacagaaatacaggcTGGAGACAGCAAGCAAGCTCACTGGGGTCTTACAAAGAATTTTATTTAGATGGAGGCAGAAAATGAGCAGACCCTTTATCCAGTTATGAGTGACGAAGCAGGAACTTGACATTGCAATCAAGAGACAAGCAGCCATTGAAACTAATGAAAAGTTTAGATCTTTGGCTAGGGATCTGattcatgcatttaaaaaaaaaaaagaaaggaaagattGGGAAGAAGTGGCAACACAAAGCAACAGTGTGTCAGTCATGTTACATAAGAAGGAACAAGTGGGAGAGGAAATTGAGAAATGGTGttattgtaatgtgtgtgtgagcgaggcAGAGTGTGAAACAGTCCCACCGAGCCCAGATGAGATatttctgtgtgagtgtgtgtgtgtttgaaagaaaTCTACCTGAAGCTTTGAAATATTGACTGGTGAAAGCACAGGACTGCTTATTCCCACTATATTCAATATGACAGCCATCTTGGGCCCACCTGGATCCCACTTTTACAAACCCTCACATAGTGTGTTGCTTGTTAGACATCTGAACAGTGTATATATGgtatatctatatattttaagtaaattatttataaaaacttgaaatcttttcaatttttttctcaaGAATCTTTGGGAAAATGTGTCACTATACCCCCATATCTCATTTTCTGCAGTTTTCAGGGGAAAAGTAGTAAGTACTGCTGTGTGGAAGaacatttaaaaggatagttcacccaaacattaatattttgtcatatttcCTACACTTTTTCAAAACCtgtctgagttttttttctttctaaaatctACTGAAATATGTTGGGGGGAAaccagccattgactttcatattttttttgtttctacttTTGatatcaatggctgcttttttctcaacattcttcagaatacatGTTGTGTTCTTgaggaagaaagaaattcattaaaGTTTAGAAACATCATGATGAAATATtcattttggggggggggggggggggtgaactatcactttaaaacacactcatacactacatccaattatctttaataaatttacctacagcacatgtctttggactgtgggggggaaagagcacctggaagaaacccacacaaacacggggagaacatgcgaacacagaaatgccagctggcccagccaggactcgaaccagcgaccttcttgctgttctTACCACTGAGCTACAGTGTCACCCAAAGATAAGTTGTGGGAATGTATTCTTTATTTGTAGCACAGTTTAATGAATTGAGTGAACAAGGTAGTAAATTTTGGATGCATAGTGaactaaaaaaatgaaagaatgattttttttatttgagttaaACTAGTGAACAGATGACAAATTTGG
>TCONS_00038347
tttaaatgtgcataGTTTATATCCACTCATCGTTTTACtatcattttcaatgttttaaaaaactattaagaTTATATTTGACATCGCAATGAACATTACTTTTTAATGATACAAATTTGACTTAACATTTGCCTGAAAAGtggttattttttacttttgttttctgGCGTAATTTAATGCATGTTTCTTTCTTTAGGCATTACAGGTCCTCTGTGACCCGTTTGGCGTGAGATTAAGCATGACAGCGAGCATCGAGGCATCGCAGTGCCATGCGGCGCTCCGCAGACTCCTGTAGACTCGGTCCCGGTGGTACTGCAATGCTCGCCGGGCCCCTCCACTTCCGCGTACTGGCTCTGTGATCCAGGCAAAGGGCGCGAGGATGAGCACAGACCTGGAGCGCCTGTCGCTGAACTCTTCCTCGGGGAACTCCGTGGCTTCCAGCGCGCGTTCCCTTTCCGCCAACGTCAAAAAGCTTCACAACGCGCTCAACCTGCTGCTCAGCGACCTCGAGAGAGAGCAGTTCATCCACTGTCTCAACGTGTACCACTCCAAGCGCAATGTCTACGACCTGGTCCAGACGCTTAAAGTCATACTGAACGTCCCGAGCAAGCGTCAGCTCCTGCCCATGCTGCGGCTGGTCATCCCGCGCTCGGATCAGCTTCTGTTTGATCAGTACACATCCGAGGGGCTATACTTGAAATCCGAAATCCATGCGCGCAACGGAGACCCGGACGGTGCCCAGGAGGGTGCTAACTCGAGTCCAACACATGGGGCTAATTTCCCGGCGTCTCAAGTCGCTCTACGCGGGTCTCCTGACAGCATCAGCACCAGCAGCGACGGGACAGCGACTCTTATTCCTTTACTGGGGAGGAATTTCTTACCGGAGCCCCCTGGAGAGATCCGACAGGTGATCCTCAAGCGTCACAAGAGCAATGAAGGTTTGGGATTTAGCATCCGCGGAGGATCAGAGCATGGAGTTGGAATCTATGTTTCACTGGTGGAACCTGGATCACTGGCTGAAAAGGAGGGTTTGAGAATGGGAGACCAAATAATGAAAGTTAACGACAAAGTGTTTGACCGGGTCACGCACGCGGATGCAGTAAAGGTGCTGAAAGGCAGCAAAAAGCTCTGCATGTCGGTGCGTTCTGTGGGCAGGATACCAGGCGGTTATATCACCAATCACGTCTACACCTGGGTGGATCCTCAGGGGCGCAGTGTGTCTCCTCCACCCGACCTGCTGGCGGAGCATCGCAGTGCCACCCTGCGCAGGTCCAACAGTCAGGGCCGCAGTCACATGCAGCTACTGCAGGATGGAGATGAGAAGAAGGTAAATCTGGTGCTGGACGACGGCCGCTCTCTGGGTCTGATGATCCGCGGAGGAGCTGAATACTCTCTGGGTATCTACATTACAGGTGTGGACAGAGGCTCTGCAGCGGAGTGTGGAGGGATTAAGGTGGGAGATCAGATCCTGGAGGTGAACGGACGGAGTTTCCTCAGCATCCCGCATGATGAAGCGGTCCGAGTGCTGAAGTCTTCACACCACCTCATGATGACGGTGAAGGACGTGGGACGGCTGCCGCACACCAGAACTGTAGTGGGAGAAACTAAGTGGATCGCCAGTTCACAGATTTCTGACAGCTCGGCCAGCAGCAGCGGGGGCTTTTATAAAGGTGTAGCGGGATCTCAGGTGACTCTGTCCAGTTTGGTGAACCAGAGCAGGGCCATGCTGGAGGAACAGGCCAGACATCTTCTGACCGAACCGGAGAGGCAGACCATGGGTTACTACATCCAGGAATATCGGGACGGGCACGTCGGTGTTGAGCAGCTCGTCATGGCTCTCTTTGAGCTCTTCAATACACACGCCAAGTTTTCTCTGCTGTCCGAGGTCAGGGGAATCGTGACCCCTCAGGATGTGGAGAAATTTGACGGTCTGGTCCTGAGACGAGAGATTGATGCCCTGAAGGCGAGACAGGGTGGGGGAGCAGGTTTCCAAGACTCCTTCTCCATGGTCTCGTATCCAGACACTTTGGCCTCCTCCTCCGCCAGCTTCATGACCAACACTACCCTCAGCTCCGCAAGGAACGACGGTGTGGCGGAGAATAACGGGGAACAGGGGTCTCTGGAGCACAGCAATGCCCTGCCAGACATCTCTCTGGATGAGGTTCATTCCACCTCAGATTCTCCTCCTTCCTTTAAACCTCCTCCTCCCCCAGGGCTCCAGCGGCGTCCCAGTCGAAAAGCCACGCTTAGCAAACGTCCCTCTTCCAGCTCTTCCCAATCAGGCCTGTACTTCACCGCTCCTTCTCGTTCCCACACCAGAGAGTCCAAACACCCTAAAGCACCCAAAGCTTTCATGTCTCCTCCTGGCACCCTCAAAATAGACGTCCCGGCATCTCAGCTCTCAGTCGTGAGTCAGCATCCAATCGGACCTTTCCCAAGAGTTCAGTCTCCTAATAAAGCGAAGCCTGCTCAGTCCTCATCTCCAATTCCTCCACCTGCACCGAATGTACCCGCTCCGCCCGGTCCGCCTCCTCCTCCGCCTCCACCTTTGCCTCCACCCTCTTGCCCGGATAAACCCACCCCTTCCTCCCCAGCGTCCAATCAGCATTTTGTGATGGTGGAGGTGCACAGGCCCAACGCAGAGCCCGATGTGAACGAGGTCCGGCCGCTGCCACAGGTTCGAGGAGGAACGTTATCACAGCTCTCAGACAGTGGCCAGACACTCAGCGAGGACAGTGGTGTGGACATACCTGAATCAGGACGTCTCAGTAAGGATACTAGCCCACGTCCCGCTCGCACCAGAGCCCCTCGGGATGGGCATGGAGGAGGAGAAACGTCTGCCAAACCGCCAGGTCTGTTGGAGCCGATGTCCACTTTAGTGAGAGTGGCCAAAAGCGCCAGTACACTGGGCATCGCGATAGAAGGCGGGGCAAACACACGTCAGCCCCTCCCACGCATCGTTACTATTCAGAGAGGCGGTTCAGCTCACAACTGTGGACAGCTAAAGGTGGGTCAGGTAATCCTAGAGGTGAATGGAGTGTCCCTCAGAGGAAAGGAGCATCGGGAAGCGGCACGTCTCATCGCCGAGGCCTTTAAAACCAAAGAGAAGGACTACATTGACTTCTTGATCACAGAGTTCAATGTGGCTCTGTAGGACCCCGTGATTAAAGAGCATTGGGATGGATCCGCAACACGTCTTGCCATGATTAACCTCCCAGAATCTTGATCCATGGCGCACTTCGTCTCATCCTCCTCTGTGATGTTTTGAAACCAGTCGCTGTTTGAAAGGCCATCCCGTGTGGATCAACCCCATCTTGACCTTTTAGATGGCAAATGCCAGGATAGAGCAGTTGAGTCTGTTCTGGAAGATTGGGCCATCTTTTCAGTTGGCTTATTCTATGTGAGATCCTATAATGAAATTTGGTCACCTGACCCCAAGAGACTCTTTATCAAGCTCGGATCTGTGTAT

Function

symbol description
whrna Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to act upstream of or within sensory perception of light stimulus. Predicted to be part of stereocilia ankle link complex. Predicted to be active in plasma membrane and stereocilium tip. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Human ortholog(s) of this gene implicated in Usher syndrome type 2D; autosomal recessive nonsyndromic deafness 31; and sensorineural hearing loss. Orthologous to human WHRN (whirlin).

GO:

id name namespace
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007605 sensory perception of sound biological_process
GO:0032391 photoreceptor connecting cilium cellular_component
GO:0032420 stereocilium cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032426 stereocilium tip cellular_component
GO:0002141 stereocilia ankle link cellular_component
GO:0002142 stereocilia ankle link complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-27 Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to act upstream of or within sensory perception of light stimulus. Predicted to be part of stereocilia ankle link complex. Predicted to be active in plasma membrane and stereocilium tip. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Human ortholog(s) of this gene implicated in Usher syndrome type 2D; autosomal recessive nonsyndromic deafness 31; and sensorineural hearing loss. Orthologous to human WHRN (whirlin).

Ensembl:

ensembl_id ENSDARG00000075362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038346 False 8121 mRNA 0.43 13 13979033 14175838
TCONS_00038347 True 3469 mRNA 0.54 11 13983265 14174786

Neighbor

gene id symbol gene type direction distance location
XLOC_019447 akna coding downstream 6288 13923872 ~ 13972745 (-)
XLOC_019446 BX470221.1 coding downstream 110255 13868662 ~ 13868778 (-)
XLOC_019445 niban2a coding downstream 122344 13799448 ~ 13856689 (-)
XLOC_019444 si:ch211-282j22.3 coding downstream 194174 13762409 ~ 13784859 (-)
XLOC_019443 npdc1a coding downstream 227498 13702566 ~ 13751535 (-)
XLOC_019449 man1b1a coding upstream 41446 14217284 ~ 14251453 (-)
XLOC_019450 si:ch211-196i2.1 coding upstream 77566 14253404 ~ 14310159 (-)
XLOC_019451 cacna1bb coding upstream 205389 14381227 ~ 14630840 (-)
XLOC_019452 ehmt1b coding upstream 468409 14644247 ~ 14692119 (-)
XLOC_019453 arrdc1b coding upstream 523855 14699693 ~ 14762944 (-)
XLOC_019439 NA non-coding downstream 691264 13284400 ~ 13287769 (-)
XLOC_019434 CR792457.1 non-coding downstream 917259 13055886 ~ 13061774 (-)
XLOC_019432 NA non-coding downstream 998155 12975918 ~ 12980878 (-)
XLOC_019430 NA non-coding downstream 1217352 12581514 ~ 12761681 (-)
XLOC_019454 NA non-coding upstream 588355 14764193 ~ 14765948 (-)
XLOC_019455 NA non-coding upstream 590242 14766080 ~ 14766556 (-)
XLOC_019464 NA non-coding upstream 1124116 15299954 ~ 15318397 (-)
XLOC_019465 NA non-coding upstream 1298618 15474456 ~ 15572656 (-)
XLOC_019467 NA non-coding upstream 1641512 15817350 ~ 15819871 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020221 NA coding CM030127.1 CM030127.1 13400114 ~ 13403240 (-)