AMCG00020221


Basic Information

Item Value
gene id AMCG00020221
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13400114 ~ 13403240 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020221
ATGAGTACGGATCTGGAGCGCATGTCTCTGAACTCATCCTCTGCCAACTCGGTGGGCTCTGGCGGCCGCTCGCTGTCGGCCAACGTGCGCAAGCTGCACAACGCGCTCAACCTGCTGCTCAGCGAGTTCGAGCGGGAGCAGTTCATCCACTGCCTCAACGTGTACCACTCCAAGCGCAACGTCTTCGACCTGGTGCAGACGCTCAAAGTCATCCTGAACGCGCCGAGCAAGCGCCAGCTGCTGCCCATGCTGAGGCTGGTGATCCCTAGGTCGGACCAGCTCCTCTTCGACCAGTACACCTCGGAGGGGCTGTACCTGAAATCCGAGCTTCTGACGAGCAACGGCAACCTCAGCCCCGACGGCCCGGTGGAGGCGACCAACGCGAACCTAGCACACAACGCCACCCCGTCTCACGGCGCAGCCCAGCCCACGCCGGGGCTCCTCCGAGCATCGCCGGATAGTTTCAGCACCAGCAGCGAGGGGACAGCTCCCTCGCTGGCGCCGCTGCTGGGCCGCCCGTTCCTGCAGGAGATGCTGCCCGGCGAGATCCGACAGGTGTGTCTGAAGCGTCACAAGAGCAACGAGGGTCTGGGTTTCAGTATCCGGGGCGGCTCGGAGCACGGCGTGGGGATATACGTGTCCCTGGTGGAGCCCGGGTCCCTGGCCGAGAAGGAGGGGCTGAGGGTCGGCGACCAGATACTGCGGGTGAACGACAAGGTCTTCGAAAGAGTCACCCATGCCGAAGCCGTGAAGCCTTTGCAGCCATATGTTTTGGCTCTTTCGGAGTGCTCCAAGGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020221 True 801 mRNA 0.63 2 13400114 13403240

Neighbor

gene id symbol gene type direction distance location
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding downstream 12117 13368648 ~ 13387997 (-)
AMCG00020215 NA coding downstream 48445 13344228 ~ 13351669 (-)
AMCG00020214 NA coding downstream 56509 13338553 ~ 13343605 (-)
AMCG00020207 NA coding downstream 126718 13255533 ~ 13273396 (-)
AMCG00020211 LOC107584610 coding downstream 152486 13237915 ~ 13247628 (-)
AMCG00020219 NA coding upstream 5465 13408705 ~ 13427411 (-)
AMCG00020220 NA coding upstream 66570 13469810 ~ 13470856 (-)
AMCG00020224 NA coding upstream 183140 13586380 ~ 13588928 (-)
AMCG00020231 NA coding upstream 247349 13650589 ~ 13663220 (-)
AMCG00020237 NA coding upstream 269055 13672295 ~ 13684406 (-)
G61696 NA non-coding downstream 62013 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 392448 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 594681 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 656677 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 816366 12578671 ~ 12583748 (-)
G61729 NA non-coding upstream 43762 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 175169 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 347844 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 386151 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 418508 13821748 ~ 13823540 (-)
AMCG00020212 NA other downstream 175602 13216996 ~ 13224512 (-)
G61589 NA other downstream 401891 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 890177 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1347903 12001700 ~ 12052211 (-)
G61269 NA other downstream 1698469 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 192278 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 260836 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 401780 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 408173 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 421449 13824689 ~ 13834729 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019448 whrna coding NC_007132.7 CM002905.2 13979033 ~ 14175838 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding CI01000006 null 11177136 ~ 11285031 (+)