AMCG00020207


Basic Information

Item Value
gene id AMCG00020207
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13255533 ~ 13273396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020207
CGCGCACAGCGGAGGTGATGGGGGAGGTGGGCCGGCTGTACAAGCAGCAGTACAGCGTGGCACTCTTCAACAGCGTGCCTCTGGAGGATAAGTCCATATTCTCAGGTCTGCTCTTCCAGTTTCTGGAGGAGAACAAGAAATGGCGGAACAGATTCTTCTTTGTGCCGGACTCCTATGTCATCACCTACTATGAGACCCGGCTGGCCTACGAGAGAGGGATACAACCCAAGGGAACCATCAGCTGTGCTGGGTACAAAGTGCTGACTGCTATGGAGCAGTACACCGAACTGATCAACAGCAGCCTGCCAGGTCTGAAGGTGAAGGCGGGCAGCTCCCCCTTCCTGAAGTGTGCCACCCAGTTTCCCATCATCCTCTGGCACCCATACGCACGGCACTATTACTTCTGCGTGATGACGGAGAAGGAGCAGCAGAAGTGGTACGCTGTGTTCCAGGACTGCGTCCGACATGCCAACAACGGGCTGTCGGAGGAGTGCAAGGTTCAGACACCCGCCTTTACAGACGCTGTGCGGCTCTACCGGCAGGCCAAGGACCAGTATGGCACGTGGGATATGATGTGTGGAGATGCCACACAGatCTCTGATGCAGTGTACTCTATGGTGCAGAATCAGGCGAATGCTCAGTACACCGCGGTGCTGCAGCTGTGCGAGGCAGAGCGCCCCCCGCTGGAGGCCTCCATCCGCACAGACATGGACCAGATCATCACCTCCAAGGAGCATGTGGCCAACAAGATCCGGGCCCTGGTGCTGCCGCGGGCCGAGCAGCTGCTGAAGCTCAGTGTGCAGCCATATGTGTCGTCCATCCTGGATGCGCTGATGGAGCCCACGAGCCGGGGCTTCGCCGAGCACATGGAGAAGGCGTCCATGCTGGCGTTCCACCCGGTGAAGATGCAGAGCTGCTATGAGAAAATGGAGGAGCTGAAGTTGGAGGGGCTGCAGCAGCGCTTCGATGTGTCCAGCCCCTCAGTGTTCATGCAGAGAGCCCAGATCCTCATGAGAGAGCAAATGGACAATGCCATGTACACCTTCGAGCAGCTGCTGCACCAGAGCCTGGAGAGCCAGGGGGGGGAGGAACTGTGCAAGAGCATCCAGCGCTGCCAGGAGAGAGTCCTCAAGAAATATGACTATGACAGCAGCACTGTGCGCAAGAAGTTCTTCAGAGAGGCTTTGCTGCAGATCATCATCCCCTACATGCTGAAGCAGCTCTCCCCCACCTGCAAGCCTGATTTCGCTCACTTCCAGGAGCTGATTTTCGAGGACTTCTCTAAGTATATCCTGCTGGAGAACATTTTTGAGGAGGTGGTGCTGCAGTCTGTGATGAAGGACATTATGCAGGCGGTGAAGGAGGCGGCAGTGCAGAGGAGGCACAACTTGTATCGCGACAGCATCGTCCTGACCAACAGTGACCCCAACCTGCACCTGCTGGCCGAGGGGTCGTCCATCGACTGGGGGGCGGAGTTCGCGGCGGAAGAGGAGGCGGCGGGGCATGGCAGCGAACATGGCCGCAGGAGGCGTGGCAAGCAGGTGGTGTCCATGATCCAGCTGGAGGGTACTGGGCTGCCCAATGAGTCCTGCATGGAGGTGCCCGGGGTGGAGGGCATCCCGGAGGAGCAGGAAATGGGGCCACAGAGTGGAGGTGGGGTTCCAAGCGAGGACACCGAGCACCCCAAGTCCCCCGACTGTCTGCACGAGATCCGCAACCTCATCAGCCCTAAAGTGGAGGTACAGGTGTCCTTGCTGAGCGCTGACGTCCCTCATCTCGCCAATGGAAACCTGCTGCAGGAAGCCACGGATGGCGCCGTGCCGCCCACCAAGTCCCCAGTCCAGAAAGTGGCAAAGACCGAACCACTGGTGAAGGAGGTGGTGCAGGAAGTGGCCCAGAGCATACCATCTGCAGAGAGTGTGGCACAGGAGCATGAGGCAACAGTACCACCCAGTCAGgaacaagaacaacagcaacaggagaaagagagggagagagaggagtccGCTGAGGTGTTGGTAGACTCCCCTGCCGAGTTGTCACAGCCTGCCCCTGCCGATTCCAGCTCCTCCCACCATCACCACGATGACAGCGAATTCCAGTCCCCCGCCAGCGTGGAGGTGGAGGAACAGGCTCAGACAGTCAGCAAAGCCCCTCAGGGGGCGGGAGATACCATTGTGGACCCAGCCAATGTGGAAGTGACACTGGAGCCCAAGGAAGTGGAGACCGGAGCGGAGGATTCTGGGAAAGGGAGTCCGCCGGAGTGCGAGCCAGTGCAGCCAACCACCATTTAAGACGAGCAACATTAACGAGAGGAAAGGATAACAGACGAAGAAATGgaggaataaaacaattaaatgctttatttttttgtttagatttttttaaggcaaatgagcaggaaagaaaggaaaagaggaaaggtttattctattttttatgcatttttattaatcgCAGAGTGACGTTCTGGAGGGTCAACTTACAGATGGATGAATTGGTTTCCGTTTCCGTTTTTCTcgttaggtttttttttccttcctctttttttaatcattataattattttattaacagaaatCACTTTGACCCTTGCTTCAGTGCAGCAGGATCCACTCTCCTATTCTCCTAGGCTCCCCCGGGGGGGGTTTGTGTAAGCAGAGCTGACTTGAGGAGAGgaagttttacttttttttttttttttttttcttttatagcaCTATACACTATATACCCCTCGATCTTTTCTCCTGCTGTTCAGGGTGATGCGAGTGGCAGAGCCCGCCTGGCCGATACCAGCAGACCAGGAATGCATTGCAGTGCAGTGGAGTgtgaccagagagagagactaataTGGACAACACACAGGTCACCTtcctcctttctccctctcttgctcCTGTTTCTCCTACCTTGCCTGTTGTCACTCAGCTGGAATGGGACACTATCAGGAAGAGATGTGTGCGTGAGTCCTGCGAGGGGGGCTTTCCTGCCTCCTGCTGGGTGGTGGCACTGGGTGGTCGCTGCCTGCCTGTCCCAGCAGCTGTGCTCCAGAGGACACTGTTCCGATGTAAGATGATTATTTTAACCCcaacctgtctgtctgcctgcctgcctggtTGCTCTGTCTGCCAAACGACGCTCCCAGGCGGGGGAGAGGCGTGCAGGAGCCTGTCCGCACACCGGCGGTGACTCGGGCCACCAGGGGTGCAGAAGGAgaagcaaaatgaatagtttcaattttttttttttttcttttaagaaaatgGATCTGTCTATACTGTAACAGTCAGTAGGATTATAGTTGGGAGGGTAACTGTGCACCATGACAACTGACTCCACGGCCCCTCCGATGCACTAACACGGCGGGGCGCAGCAGGGTTAGGGGAGTGCCGGTGGACCCTGGGGGAGTGTAACACTAACACGCTATAGTGCATGTGGTGTCACTGTGTAATGGAACCTGTCACTGGTGAAATGCTACGTGTACCTTGGGAGACCGGGCTCGGTTACCCAAATGATTACAGAATAgactgggtgggggggtggaagaAGGAGATTGTCTCCTcctgttatgatgatgatgatgatgccaAGGCCCGGGCAGTGGGGATCCTCGGTGTGTCCGTGCAGCCGAGAGCTGGAGGAGCGTGTGCTGGGCTGTGTGCTGGGCTGATGCATTCACATCTCTGCCAACAGAGggccttttgctttttttctttttcaacttGGTGTACAGTGTTTACCCACcatgggagtttttttttttttttttgggggggtccCCAACCCCTCTCAAACCCTCAGACGTTGTGTAAATTTATGAAGCAAGATTGCAAAAACCTTTTTTGTGCTGATTTTTTGCAGACGTATATTTACATCTTAGCTTTGCTCACTTGAATCACTtggtgggaggtggggggtctGTTTATCAACAGCTAGATCAAGGATTAAAAACACTAGTGACCAGGGCACCTCCTAGACCAGAAACCAGGCATCTGTTTGCACAAAACATGTTCACCCTTCAGTATATTAATGACCAACCACTTGTGGTGTGGGGGTTTAAGGATTTCATCACATTAAGCTGGTATCTTCTATCACTCTTACAAAGAACACTTGGGGAGAGGCACACGGAATATGTAAATTAAGGGGATTTCAATGCAACTGACCGATTTCATCCGTGCTCACTCTTCCTGCAGATTTCACACTAACGCACTCTGAGAGCTTCACCATTCCTGCTTCTTAAAAGCCTTATGTATGTGGGCTATTGATTCCCAGGTGCTACCCGGGGATGCGAGTCGCCCACGATCTGCTCCTCACAGGGCTGCTGGGTTTTGATGGGACAGTTCAAAActaatttttaaatttgtattttaataagatcAATTGATATTTGTGTGTTCATGTGCATTGATGcatatcatttttttccttgttcttTTCCTTCCTGAGAAACTGTCTAATAGGGACCAGTGGCTCTAGAATTGCTCCATGACTTTCTgttctggggggaaaaaaaacataccaatcCAACAATCGTGTGGCGCCGATGTGTTAGGTGTCCTGGGAATCTGTCTGCCATGCTCTCCTGCAGTCCAGTGAGCAGTGTAGCCCAGCTTGACTAACAGGCTGTGCAATGGTACCTGGTGCTGTGCATTCTGGGACAGCATTGCTTGAACAGTCTGCCGATCTGCCAGCGTGCAAGTGTGAAGCCCTGCTGTAGCTTTCGGTTGGTCAGGTGTGGTCGGTCGTTTGTTTGCGCTAGTTTGACcaaaccccccccctcccccctttttCTCATAGGCAGCGATTGGGAGTGGTAGGGATTTGGGTCTTTGTTAGTTGGTAGCCACAGTTTGTGTTCTTATGAAGAGGGTATCATGACAGGTTCATTAGAAAGTCAGGTGGTAAGTGTCCTGTCGTCAGTGCACAGTTCCTTGatgctgtagtttttttttttttacagactggtgggcagagagagagcgagggaggtgtgtcagtcagtgggTTTTAAGGGTGTTGCAGCTTTGTAGAGTGTGGGTGTCCCATTTGGTGAGCAGCTGGTACATTGATCCTGATGAGGCTCCCGGATACACTCTGTGCTGCAGCGCCTCTGGCAGCGACCGTGATGGTGACAGTGGCACAGCTCGCACCTATCTGAGCCTGCCTTTATCTGTGCTTCTGGGTAACAGGGGTGGCTTTGTGTAGAAATTAAAGTTTTGcaaatgtgtggttttgtttgttttggagcCCAGAGATCCTGATTATCCTTCACACGCAGATTGCCTTCCAAATTCGGCCTGGCCAGGTCTTCAGATAGAACTGTATAGAAGTCCTCGACAGTTTCCAATTTCGAAATACTGAAATCTGAAATACGGTGTCTGAAGCAGCGTGATGTGTGGGCCTCGCAGTGCAGGCCCGAGGACAGAGTGGGGGAAGGGTCTTTCATGGAAGGAATGGGGCCTGAGAGTGTTTATCACGATTAGGACGATTGTTGTTATCGTCCactaaaattaaaaccacagcCTGAGTGGAGTGGCTCAGGGTTCAGAGTGCTGGCTAGTGAAGGACGGACAGGGAAAGGTGTCCATAGAGCTTAATTGAAATGCTGAGTAATTGAGTCCCGTTTTCTCGGCCTTCTCATCTGGCTGTGTTGGTTGTCCTGAGCGGTAGGGCAGTGCTGTATCTGTGGAGCATTATCGGCAAGGACCAGCATGCTGTGCGCTACACAGTATACCTGGTTCTCTATACAGTCCTCAGTGTGTGCCCGTGTTATGCCTGTGAATATCATGCAATTGCTGATCTCGCACACGGGCCAGATTCCAGTGCTTTATTGTGAGAAGAGACCATGTACAGAAaatgtggggtggggggtggagaggAGCACTTCTAGAGCAACTGACGCACTCAAACCTtggcttttctgtttctgtccctTACCGCCTCCGCAGCTGCTCCGTGGCCCTGGTTCTGTTCCGTACACCAGCCTCCCTGCAGGTTGTCATTGTAGTCTGTtacctttatttattacagtgtaATTTCATGCTACATTTAGCATTCCTGCATTTTCTGCACTGTCATTCTtttccctatatatatatttttttatttttggagattttttttttttctttgagtgCTCAAGTTCCCcttgaaaatactttattaaatatgCTACACAAATatacttataaataataaattgttatGGATTAAATGAAGTTGGTTGGtgttatgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020207 True 6239 mRNA 0.51 12 13255533 13273396

Neighbor

gene id symbol gene type direction distance location
AMCG00020211 LOC107584610 coding downstream 7905 13237915 ~ 13247628 (-)
AMCG00020209 nelfb,LOC106579998 coding downstream 20137 13230008 ~ 13235396 (-)
AMCG00020208 NA coding downstream 50544 13199720 ~ 13204989 (-)
AMCG00020210 NA coding downstream 75347 13170986 ~ 13180186 (-)
AMCG00020205 NA coding downstream 91887 13139172 ~ 13163646 (-)
AMCG00020214 NA coding upstream 65157 13338553 ~ 13343605 (-)
AMCG00020215 NA coding upstream 70832 13344228 ~ 13351669 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding upstream 95252 13368648 ~ 13387997 (-)
AMCG00020221 NA coding upstream 126718 13400114 ~ 13403240 (-)
AMCG00020219 NA coding upstream 135309 13408705 ~ 13427411 (-)
G61593 NA non-coding downstream 247867 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 450100 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 512096 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 671785 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 756107 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 63620 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 173606 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 305013 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 477688 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 515995 13789391 ~ 13792931 (-)
AMCG00020212 NA other downstream 31021 13216996 ~ 13224512 (-)
G61589 NA other downstream 257310 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 745596 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1203322 12001700 ~ 12052211 (-)
G61269 NA other downstream 1553888 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 322122 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 390680 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 531624 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 538017 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 551293 13824689 ~ 13834729 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031119 niban2b coding NC_007116.7 CM002889.2 28915389 ~ 28970059 (-)