AMCG00020205


Basic Information

Item Value
gene id AMCG00020205
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13139172 ~ 13163646 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020205
ATGGCAGAGtgtgtgGAGCAATTTTTTGCCAGTAAGAGACGTGTGTCCCGCTCCTGCTGTGCCGGGAAAGCGCAGCCCTCTCCCTGGTGTCGGCGCTCTGTGCCGTCAGTGCTGAGGCCCCAGCCGGGCACCTCCAGCTTATCAGCCCCCCATGGCCTGTGGGAAGATCAGGCTGCTCTGTGGCCTCAGTTTCCTCCTCTGTCTGTCATCCTCCCCATGGAAACGGGAGACGGCTCGCGGAGTCACTCAGGGTTACTGTGGCTCTTTAGTGAGGGAGCGAGAGACCaggaaataaagagagagatgggggggacAGTGTGGGAGAGACTGGGCATGAGGGACAGAGCAGCAGCCTGTAGGTTTGACCACGGAAGTGACCGGTCCTGGACTGCTGGCTTCCTGTTTCTGTGGCGTAGTCCCGACACTGGACAGCCACCCTGGGTTTTCCCCCCAGAGGTGGTGTTCCTCTCCTCCATCTGGCCTTCAAGGTTCAGCTCTACTCTGTTACAGTCGAACAGTAGCGACCCTGCCTTCCCCGGGCTTAATCCGAGACGACAACAACAGAAAACTTTAATCCCAACGCAAACCGTGCAGTCTGTGTCGGGCTTCCTGCTGCACACTCCCTGCCTCAGCCACGTCTGCCCGGCCTCAGGTGGGTGTCCGAGCACAGCGGCATTCACCGCGCCCCGCTCCGTTTCCTTGGCGACGCCGCGGTGCAAGCATTCCAGAGTCCTGTGTGGGGGTGCTGCTCCCCTGACAACCAAACAGGACCCAGCCTCTGATTGGCCGGGTGAGAAAGCGGCGCAGACAAAGAGGGGGGGCAACCTGAGGAGACCCCTTCTTACCATCAAGGTGAACTGCTCGGGGCTTTGTGGCGTTTCCAACAGGATGAACGACACGTCTTGGGCTTCGGAGGAGCAATACTTCAGCAGCACCCTGTCTGTGGCAGATAAAGGCACTCTGGCAGTTGGAGAGCACAGTTTCCCCTTCCAGTTTCTCATCCCAGTGTCTGCCCCCACCTCATTCGAGGGGCCCTTCGGGAAGATCGTGTACCGAGTGAAGGCCGTGATTGACACGCCACGCTTTGCCAAGGACTACAAGGTGGAGAAGCCCTTCTACCTACTGAACCTCCTCAACCTCAACGACGTCCCCGACATCGAGCAACCCAGCTCGGCAGTGATTACCAAGAAGTTCTCGTACCTGCTGGTGAAGACGGGCACGCTGATGCTGCGGGCGCGGAGCGACCAGCGGGGCTACGCACCTGGACAGGTCATCCAGCTGGCCACCGAGATCCACAACAAGTCGGGCAAGGACACCGGTTATGTGATGGCCAGCCTCATCCAGAAAGTGACGTATAGGACAAAGAGGGTGACCTATGACCTGCGCACAATTGCAGAGGTGGAGGGCGCTGGCGTGAAGGCGGGGAAGCATGCCGAGTGGAAGGAGCAGATCATCGTGCCGCCGCTGCCGCAGTCTATCCTCTCCGGTTGCACCCTTATTGACATCGACTACTTCATCCAGGTGTCTTTGAAGTGGCCCGAGGTGTTGGTGACATTGCCCATCTACATCGGGAACATCGCCATCAACACCTCCCCCAGGACTCCGGCCCGGGCTGCCCCCCCTACCCCGGTGCCCCGCTTGCCCCCCCGCCCTGCACCGCGCTCTGTCCCTCCCAGAGCCAGCCTCGGGGTGACCCCCAGTGCCCCTccagtggaggagggggaggaagacATGGAGGCCGGGGGACTGGAGAGTGAGGCGATCCCCACCAAGAGCCACTCCCAGCAGGACTCCTCTGGCCAGCAGCTGGCCTTCTCTCCCAGCGCCTTCAGCTACGCGCCCGGCCTCACCTTCTCTGAGGACCAGCGGTGCGCCAACCCCACCAGCTCCTCGGCACCCCTGTTCTGTGTGTCCACTGGTGCCACCATACCCTTCTTCTCTGAGGGGGGCGCCACTCCCGTACCCACCACCTGCCCGCTCATTCTGCCCCCGGAGTACAGCACCTGGGGGTACCCGCATGAACCCCCCCCAACCTATGAGGAGAGCTGCAGCAGCCCCAACACCAGCGGCAACAGCAGCGGCAACAGCAGGAGGTAAAGCAGTGGAGGAAGACTGACACTGGactgcacacagcactgctgcccCCCACAGGAAAGGGTGGGAACTGCAGCCTGGCAGCATCTGATTCTATTTACATTGGAGAAAAGGGATggcgtttgttttgttttttcctcccctgTCTGATGCCTCTGTAATAATGTCATGTAAAtcaaagaggaggaggaagaacagaaggaaaaaaaaaaaggagtgCTTGATCTTTACTTTGGATTTAGTGTTTCCTGAGTACCTGGATGGATACGATGGGAACTAGCTACAAAAACTGGATTTGGGATTTTAGATTGGTCACTTtccatttaaatgcttttttttaaacaaacatttgcatGCGTGATGCCTTAAATTTAAGACACTCCTAATctgggttgtttttgttttctccttttcaattttattacaaCCAAAGCTGGCCTTCGACATCAGGTGTCAAAAAGAAATGTGTgctaaaaaacaagaaatgagAGCgagaatggagaaaaaaaacaaacaaaaaaaacagatgttcaTCTCAACCAAAACGACACTTGACTTGTTTTCAAGACCTCCGCTGCAGCCGCCCCAGTGTGGAGATGGACGGTGATCTGCCGGCTCTGATGGCTGGTGGGGGACTCTGGGGCACAACATTTATTTGGGAGGTAGCTGCTGGTTAAGATTGTCAAGTTTCAACATCGGCAGCCTTCAGGAGACCGGTCCAGAGTGAGGGAAGGAAGCTCCACAGAAGAGACAATTCTCTGAGGCTGTTGGAGCGACTCCGGCCGGCTGGCCCGCTGCACAGGGGGTGGGTCGGCCGTCTcggtgtctctctgtccctccgcTGGGCTCTAAGGCCTGCTCTACTGTACCCACGGCACGCCTGCAGGAGGCCAGTGACCCACTCATCCTCTCGATGCCTTACGTTCCTCTTCGCTTTCTGTTCATCTCTATTTACTGAGTCACTCTTCCTCTGTACAGCTGCGCCCGTCCAGGGAGAAGGgtcaaaacaaagcacacacagGCCGAAGTTTTGGACGCATTTGGCGCAGAAGGCTGGCGTGTTTAAATGGCGGGTGCTCAGGGGCTGCAGTCTGTCTGGGTCTAGACTGGTGCTGTGTATTTGATATGCACGAAACCCAAGGAATCCTTTCTGTCTACCTTTGTTGCTGACGTTTTTTCCCCAACTCGGCCAGCGACGCGCGGCTCGGGTCTCTGTACCTGGCAAACGGCCCCCTCTGCTCTCGCCAACTGTTCATTGTAACCTGGCTGGGAACTTGACCTTACGCGAGTTTTGggcaatttaaaaaactgaTGTGACAGTTCGTCTCATACTTCTGCTCATTTTCCACCGCCACCTTCTCAAAGTTCCTGGTCTCGTGATTGCCTTCGGCCCGGTTTGCACCACAGATGTATTTTGCACAcacgtttaaaaataaaaattccccATACAGGCCTATCCCTTCTTAACCTATTAGAAAAGAGTGTGAGATTGAGCCAGAAACATCGACATTTACTGTTACACCTTGAGAGTGATTCCAGACGGTGACTCAGAGCTTGGCTATGCAGCGCGCCATCCTCTCCCTCCTCACTGTGTTCGCACTTCACAGCGACTGCAGCTGCACGTCTTCATTAATGCCCTGTAGAATAATGCCATGCCCCACCACCACAATAACACCTCTGCAATGAATACTCCCATCGGCATGCAAATTCATTtctgtacataaaaaaacatattgataaAGATGACATAACAGAAAATCTACTCGGGcgttaacaaacaaaaacgccTTTACTGACGGATGTTTTACAAGCCTGTCTGACAGAACTCATGTATCTGGTTTGGACTGGGCTGTTGAATAAGTTGACCAGTGCGTTTCTGGAGGGACTTCAGTGTGTAGTGcgttttttgatttgttttccagatgGAACccccttcttcttttttcataTGTCCAATCTACCTTTCTCATGTGCTGTGACTACTGCTTTTATACCTCCCACTTATAAAAGGGTGATGCTTTCCTCGTGTATTCGGCTCAGCGTTTTGTCCTCAGCTGAGCTGCCCTGAATGAAGACTCTCCTAAGAGCGCGTTGAGCACCTGCTTCCAGGCGCTGtggagatttatatttattgattttatgataatgatgattatgattttaTTCGTGTAGGGGATGCTTCAGAAGCCAGTGCACAGGGATTAGTCCCGTGTCTTGTCTGCCTTAATCCATAAGTAAAGTAGTCACTGGGCCGCACTGGTTATTTTGGGATCCCAGCCTGGCTGACTGGAGTGTAGTGTGAGGCACTGCTGTTCAGTAGGGATCTTGCCCATGTGGATCATGTGCATATATAGGACAGAAACGAGTTGCCTATATTGTACATATGCCACAATTGCCATCCTTAATGTGTGCCTAAAACCTATGGGGAGTATTTTAAAGTTTcgttttgtatatttattgtataggTTGAAAATCTGTTCCTGCGAGATTAACCATGCCACCTATCTTCAGCCTATCAAATGAATATGGATTGCAGACTGATATACATTTGGCTTCCTGTTCCTACTCATCTGCTGCTATTTTTGTCCTCCACCCTGTCTGCTCCCATTTTTAGGGCAATAGCTCCTCCTGGTGGTTTGTGGGGAGGGAGCGCAAGTGCCTCTGCCTGTCTATCTCCAGTTTACAGTTCTGTCAGTGCCCTGTGCACTGCGCTGGTTTTCTAATCCGACTAAGATGCGACCGGTCCTGTgaaggggtgtgtgtggggtgggctCTCTCTTTCTGGAGGGTTCCTTTATTGGCCccacatttatttctttgtttttgtttttaaagcttctTGCACAAACGGCGCACTCTATAGCTTTATTAACCACATTATTATcctgttctgtgtttgttcagtttactttttttttttttggttggttattgttttgttctcttCTTTCTGTGGGtggtttgtgtgtcttttgtatttttatactgGTGTACAGCTTCCTGTAACCTTAGACTTGATTTTCGGTCTCCAACCCCTGATTTCAGCAGAGCACCTTAGTGAATCAATGttacatctttttaaaaacatgttgcaaTCATTGTTCTAGGTACTAATAAAAATTATCATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020205 True 5224 mRNA 0.52 13 13139172 13163646

Neighbor

gene id symbol gene type direction distance location
AMCG00020204 NA coding downstream 28333 13092563 ~ 13110839 (-)
AMCG00020203 NA coding downstream 55220 13083629 ~ 13083952 (-)
AMCG00020199 LOC102778062,LOC101486272,LOC102199534 coding downstream 59637 13075718 ~ 13079535 (-)
AMCG00020202 NA coding downstream 101107 13034089 ~ 13038065 (-)
AMCG00020201 LOC107681248,LOC107560222,LOC107587427,LOC107690670,LOC107757972 coding downstream 105463 13029669 ~ 13033709 (-)
AMCG00020210 NA coding upstream 7340 13170986 ~ 13180186 (-)
AMCG00020208 NA coding upstream 36074 13199720 ~ 13204989 (-)
AMCG00020209 nelfb,LOC106579998 coding upstream 66362 13230008 ~ 13235396 (-)
AMCG00020211 LOC107584610 coding upstream 74269 13237915 ~ 13247628 (-)
AMCG00020207 NA coding upstream 91887 13255533 ~ 13273396 (-)
G61593 NA non-coding downstream 131506 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 333739 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 395735 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 555424 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 639746 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 173370 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 283356 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 414763 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 587438 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 625745 13789391 ~ 13792931 (-)
G61589 NA other downstream 140949 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 629235 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1086961 12001700 ~ 12052211 (-)
G61269 NA other downstream 1437527 11695691 ~ 11701645 (-)
G61170 NA other downstream 2382753 10755468 ~ 10756419 (-)
AMCG00020212 NA other upstream 53350 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 431872 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 500430 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 641374 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 647767 13811413 ~ 13813003 (-)

Expression


Co-expression Network