RNA id: AMCG00020205


Basic Information

Item Value
RNA id AMCG00020205
length 5224
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00020205
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13139172 ~ 13163646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGtgtgtgGAGCAATTTTTTGCCAGTAAGAGACGTGTGTCCCGCTCCTGCTGTGCCGGGAAAGCGCAGCCCTCTCCCTGGTGTCGGCGCTCTGTGCCGTCAGTGCTGAGGCCCCAGCCGGGCACCTCCAGCTTATCAGCCCCCCATGGCCTGTGGGAAGATCAGGCTGCTCTGTGGCCTCAGTTTCCTCCTCTGTCTGTCATCCTCCCCATGGAAACGGGAGACGGCTCGCGGAGTCACTCAGGGTTACTGTGGCTCTTTAGTGAGGGAGCGAGAGACCaggaaataaagagagagatgggggggacAGTGTGGGAGAGACTGGGCATGAGGGACAGAGCAGCAGCCTGTAGGTTTGACCACGGAAGTGACCGGTCCTGGACTGCTGGCTTCCTGTTTCTGTGGCGTAGTCCCGACACTGGACAGCCACCCTGGGTTTTCCCCCCAGAGGTGGTGTTCCTCTCCTCCATCTGGCCTTCAAGGTTCAGCTCTACTCTGTTACAGTCGAACAGTAGCGACCCTGCCTTCCCCGGGCTTAATCCGAGACGACAACAACAGAAAACTTTAATCCCAACGCAAACCGTGCAGTCTGTGTCGGGCTTCCTGCTGCACACTCCCTGCCTCAGCCACGTCTGCCCGGCCTCAGGTGGGTGTCCGAGCACAGCGGCATTCACCGCGCCCCGCTCCGTTTCCTTGGCGACGCCGCGGTGCAAGCATTCCAGAGTCCTGTGTGGGGGTGCTGCTCCCCTGACAACCAAACAGGACCCAGCCTCTGATTGGCCGGGTGAGAAAGCGGCGCAGACAAAGAGGGGGGGCAACCTGAGGAGACCCCTTCTTACCATCAAGGTGAACTGCTCGGGGCTTTGTGGCGTTTCCAACAGGATGAACGACACGTCTTGGGCTTCGGAGGAGCAATACTTCAGCAGCACCCTGTCTGTGGCAGATAAAGGCACTCTGGCAGTTGGAGAGCACAGTTTCCCCTTCCAGTTTCTCATCCCAGTGTCTGCCCCCACCTCATTCGAGGGGCCCTTCGGGAAGATCGTGTACCGAGTGAAGGCCGTGATTGACACGCCACGCTTTGCCAAGGACTACAAGGTGGAGAAGCCCTTCTACCTACTGAACCTCCTCAACCTCAACGACGTCCCCGACATCGAGCAACCCAGCTCGGCAGTGATTACCAAGAAGTTCTCGTACCTGCTGGTGAAGACGGGCACGCTGATGCTGCGGGCGCGGAGCGACCAGCGGGGCTACGCACCTGGACAGGTCATCCAGCTGGCCACCGAGATCCACAACAAGTCGGGCAAGGACACCGGTTATGTGATGGCCAGCCTCATCCAGAAAGTGACGTATAGGACAAAGAGGGTGACCTATGACCTGCGCACAATTGCAGAGGTGGAGGGCGCTGGCGTGAAGGCGGGGAAGCATGCCGAGTGGAAGGAGCAGATCATCGTGCCGCCGCTGCCGCAGTCTATCCTCTCCGGTTGCACCCTTATTGACATCGACTACTTCATCCAGGTGTCTTTGAAGTGGCCCGAGGTGTTGGTGACATTGCCCATCTACATCGGGAACATCGCCATCAACACCTCCCCCAGGACTCCGGCCCGGGCTGCCCCCCCTACCCCGGTGCCCCGCTTGCCCCCCCGCCCTGCACCGCGCTCTGTCCCTCCCAGAGCCAGCCTCGGGGTGACCCCCAGTGCCCCTccagtggaggagggggaggaagacATGGAGGCCGGGGGACTGGAGAGTGAGGCGATCCCCACCAAGAGCCACTCCCAGCAGGACTCCTCTGGCCAGCAGCTGGCCTTCTCTCCCAGCGCCTTCAGCTACGCGCCCGGCCTCACCTTCTCTGAGGACCAGCGGTGCGCCAACCCCACCAGCTCCTCGGCACCCCTGTTCTGTGTGTCCACTGGTGCCACCATACCCTTCTTCTCTGAGGGGGGCGCCACTCCCGTACCCACCACCTGCCCGCTCATTCTGCCCCCGGAGTACAGCACCTGGGGGTACCCGCATGAACCCCCCCCAACCTATGAGGAGAGCTGCAGCAGCCCCAACACCAGCGGCAACAGCAGCGGCAACAGCAGGAGGTAAAGCAGTGGAGGAAGACTGACACTGGactgcacacagcactgctgcccCCCACAGGAAAGGGTGGGAACTGCAGCCTGGCAGCATCTGATTCTATTTACATTGGAGAAAAGGGATggcgtttgttttgttttttcctcccctgTCTGATGCCTCTGTAATAATGTCATGTAAAtcaaagaggaggaggaagaacagaaggaaaaaaaaaaaggagtgCTTGATCTTTACTTTGGATTTAGTGTTTCCTGAGTACCTGGATGGATACGATGGGAACTAGCTACAAAAACTGGATTTGGGATTTTAGATTGGTCACTTtccatttaaatgcttttttttaaacaaacatttgcatGCGTGATGCCTTAAATTTAAGACACTCCTAATctgggttgtttttgttttctccttttcaattttattacaaCCAAAGCTGGCCTTCGACATCAGGTGTCAAAAAGAAATGTGTgctaaaaaacaagaaatgagAGCgagaatggagaaaaaaaacaaacaaaaaaaacagatgttcaTCTCAACCAAAACGACACTTGACTTGTTTTCAAGACCTCCGCTGCAGCCGCCCCAGTGTGGAGATGGACGGTGATCTGCCGGCTCTGATGGCTGGTGGGGGACTCTGGGGCACAACATTTATTTGGGAGGTAGCTGCTGGTTAAGATTGTCAAGTTTCAACATCGGCAGCCTTCAGGAGACCGGTCCAGAGTGAGGGAAGGAAGCTCCACAGAAGAGACAATTCTCTGAGGCTGTTGGAGCGACTCCGGCCGGCTGGCCCGCTGCACAGGGGGTGGGTCGGCCGTCTcggtgtctctctgtccctccgcTGGGCTCTAAGGCCTGCTCTACTGTACCCACGGCACGCCTGCAGGAGGCCAGTGACCCACTCATCCTCTCGATGCCTTACGTTCCTCTTCGCTTTCTGTTCATCTCTATTTACTGAGTCACTCTTCCTCTGTACAGCTGCGCCCGTCCAGGGAGAAGGgtcaaaacaaagcacacacagGCCGAAGTTTTGGACGCATTTGGCGCAGAAGGCTGGCGTGTTTAAATGGCGGGTGCTCAGGGGCTGCAGTCTGTCTGGGTCTAGACTGGTGCTGTGTATTTGATATGCACGAAACCCAAGGAATCCTTTCTGTCTACCTTTGTTGCTGACGTTTTTTCCCCAACTCGGCCAGCGACGCGCGGCTCGGGTCTCTGTACCTGGCAAACGGCCCCCTCTGCTCTCGCCAACTGTTCATTGTAACCTGGCTGGGAACTTGACCTTACGCGAGTTTTGggcaatttaaaaaactgaTGTGACAGTTCGTCTCATACTTCTGCTCATTTTCCACCGCCACCTTCTCAAAGTTCCTGGTCTCGTGATTGCCTTCGGCCCGGTTTGCACCACAGATGTATTTTGCACAcacgtttaaaaataaaaattccccATACAGGCCTATCCCTTCTTAACCTATTAGAAAAGAGTGTGAGATTGAGCCAGAAACATCGACATTTACTGTTACACCTTGAGAGTGATTCCAGACGGTGACTCAGAGCTTGGCTATGCAGCGCGCCATCCTCTCCCTCCTCACTGTGTTCGCACTTCACAGCGACTGCAGCTGCACGTCTTCATTAATGCCCTGTAGAATAATGCCATGCCCCACCACCACAATAACACCTCTGCAATGAATACTCCCATCGGCATGCAAATTCATTtctgtacataaaaaaacatattgataaAGATGACATAACAGAAAATCTACTCGGGcgttaacaaacaaaaacgccTTTACTGACGGATGTTTTACAAGCCTGTCTGACAGAACTCATGTATCTGGTTTGGACTGGGCTGTTGAATAAGTTGACCAGTGCGTTTCTGGAGGGACTTCAGTGTGTAGTGcgttttttgatttgttttccagatgGAACccccttcttcttttttcataTGTCCAATCTACCTTTCTCATGTGCTGTGACTACTGCTTTTATACCTCCCACTTATAAAAGGGTGATGCTTTCCTCGTGTATTCGGCTCAGCGTTTTGTCCTCAGCTGAGCTGCCCTGAATGAAGACTCTCCTAAGAGCGCGTTGAGCACCTGCTTCCAGGCGCTGtggagatttatatttattgattttatgataatgatgattatgattttaTTCGTGTAGGGGATGCTTCAGAAGCCAGTGCACAGGGATTAGTCCCGTGTCTTGTCTGCCTTAATCCATAAGTAAAGTAGTCACTGGGCCGCACTGGTTATTTTGGGATCCCAGCCTGGCTGACTGGAGTGTAGTGTGAGGCACTGCTGTTCAGTAGGGATCTTGCCCATGTGGATCATGTGCATATATAGGACAGAAACGAGTTGCCTATATTGTACATATGCCACAATTGCCATCCTTAATGTGTGCCTAAAACCTATGGGGAGTATTTTAAAGTTTcgttttgtatatttattgtataggTTGAAAATCTGTTCCTGCGAGATTAACCATGCCACCTATCTTCAGCCTATCAAATGAATATGGATTGCAGACTGATATACATTTGGCTTCCTGTTCCTACTCATCTGCTGCTATTTTTGTCCTCCACCCTGTCTGCTCCCATTTTTAGGGCAATAGCTCCTCCTGGTGGTTTGTGGGGAGGGAGCGCAAGTGCCTCTGCCTGTCTATCTCCAGTTTACAGTTCTGTCAGTGCCCTGTGCACTGCGCTGGTTTTCTAATCCGACTAAGATGCGACCGGTCCTGTgaaggggtgtgtgtggggtgggctCTCTCTTTCTGGAGGGTTCCTTTATTGGCCccacatttatttctttgtttttgtttttaaagcttctTGCACAAACGGCGCACTCTATAGCTTTATTAACCACATTATTATcctgttctgtgtttgttcagtttactttttttttttttggttggttattgttttgttctcttCTTTCTGTGGGtggtttgtgtgtcttttgtatttttatactgGTGTACAGCTTCCTGTAACCTTAGACTTGATTTTCGGTCTCCAACCCCTGATTTCAGCAGAGCACCTTAGTGAATCAATGttacatctttttaaaaacatgttgcaaTCATTGTTCTAGGTACTAATAAAAATTATCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 131506 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 333739 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 395735 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 555424 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 639746 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 173370 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 283356 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 414763 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 587438 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 625745 13789391 ~ 13792931 (-) True G61920
AMCG00020204 mRNA downstream 28333 13092563 ~ 13110839 (-) True AMCG00020204
AMCG00020203 mRNA downstream 55220 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020199 mRNA downstream 59637 13075718 ~ 13079535 (-) True AMCG00020199
AMCG00020202 mRNA downstream 101107 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020201 mRNA downstream 105463 13029669 ~ 13033709 (-) True AMCG00020201
AMCG00020210 mRNA upstream 7340 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020208 mRNA upstream 36074 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020212 mRNA upstream 53350 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020209 mRNA upstream 66362 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020211 mRNA upstream 74269 13237915 ~ 13247628 (-) True AMCG00020211
TU77089 other downstream 140949 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 629235 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 642432 12490698 ~ 12496740 (-) False AMCG00020180
TU77151 other upstream 57954 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 431872 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 500441 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 641374 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 641374 13805020 ~ 13808333 (-) False AMCG00020252

Expression Profile