RNA id: AMCG00020204


Basic Information

Item Value
RNA id AMCG00020204
length 5414
RNA type mRNA
GC content 0.57
exon number 26
gene id AMCG00020204
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13092563 ~ 13110839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaatctatctgaCAGAAGGGGTGTGAGTGATGGGGTGGGGAGAGGTGTTTAGTTAAAGAAGagtatcctttttttttttaaatgtcttttaattttttttatttcaccctTGATGTTGAATCAAAATGTTCCAAAGGGAAATCTTGTTTGGGATCCAGGAACAACAAGACTTCAGGAGGGGGACAGAGATTAAATGGCCCCAGGCTACAGCAGGGAGCAGTGTCATTGGGCCAGGAGTATGCTGGGACAGATTTCCATTGGCATCATGGCAAAAAGAGACCTGGTACAGGGCCTTTCTATCTTATCTGAAAGGACAGAGCTGCTGGTGTATTGAACGCACCTGCCATCATGATGGGTTTGCTAAAGCTCTTGAAATGACTGGTAGAGCCCAGTGAAGCAGCCAGGGGTCTGCAGAGGGAGGCACTTATTTTTCACCAGAGGATTCTCTTCCCGGTCTGCAGACCTCGGGGTGATCCAGTCAagtgtaatgtaattaaacctGTGCTAGGCTGGCTGTGgcatgttttacagttttggGTTTCGGTGcaacaaagattaaaaaaaagaaagaaaagaaatgttTAGTCAGTAGGCCTAGAAGTCTTGCTGTCATTCTCTTGTGCTCTGATTGGTTGAGTGTTTTGTTGTACTTATGTGTCCCCCCCTTCtctgtcctttttcttttttctccaacTGTGTTCAAAGGAGCCCTTCACACAGTAGACCCAAGTCTGCAGACCCGTAGGAAAAGTGGGGAGTCTTTGTTGCTTGAACGAACGCACTTTGCAGCCCACAGGTGTGGCCAAAGGGGGCGTTGGGAAGAGAGAGCTGATGAAGACAGAGGTGATGAAGGAGCCGGCTGGCAGAGATGGGGGTCGCGACCGTGAGGAGATGGGTTCGAAGGTGGCGACGGCATCGGTGGGCGAGGGTGAGCTGAATGGAACCGGCGAGCAGACCGAGGACCCAACCACCCTGAAGAGCTACCAGGGCCCGGGCTCAGCACCGGCCCGCATCTCTCAGGATGGCTTGGCCAAGAACTCGGCTGCCACGGCACCCCGCCAGCTGGACCCCCACCCCAGACTGGGCCGGGTCAGCGAGAATGGAGTGTTGGAGCGCGGTGGGGGGGACTCCAGCAGGCAGAACCATGGCAAGCCTGGGGACCCCCCTCAGGCCTCGGTTACTGGGAGCAACGGGTTCATCCTGGGAAACAAGCAGCAGGTGCAGCAGGAGGCCACCACGCACAGGACTAGCGGGTCGGGCTCTGGCTCGGTCACTGCTTTGGTTGGCCATGCTGCTAAAACGCtgccctcttcctcctcctctgccgCTGCCTCCAGCCGGTTGCGGGGGGGCCTGAGTGCGGCGGGCAGAGTGGACCTCCGTTCCGGCGAAGACAAGGCTGACACAGAGACTAAAAACGGCACGAACCAGGGTCCCCCGGCGCCCCTGGTCATACACAGGGCCAGGAAAACCATGGCCAGGCCGGCTGCCAACCAGACCGCACTAAAGCTTCTAAACAGGGAACCAAAAGAACCAAACGACTCTAAAGACGAGAGCCGAAACACACCAGAGGCCGGGAAGACGCAGCCCACGCCTCTCTCCTTGCAAAACCAGCTACCTCAGAGCCTGAACGACAGCGCGGCTGCGGTCAAACCCACCACAGCTGCAGCCGCGTCTcggaagaagaagaggaggatggGGACTTACAGTCTCGTCCCCAAGAAGAAGCCCCGTGTCCTGAAGCAGCGCTCGGTGCTGGAGATGTTCAAGAGCATGGCAAGTGCCGCCTCAGGGGCtcagAAAGACAGCATGCACGTGAATGGAGAGAGTGTCGAGAATGAgtcggaggaggaggagtctGAGGAAGGGGACGagtctgaggaggaggaggagcagcagccGCCACAGGCAGGGGAGCGCTCTGGGACGGGGTGGGTGGCGGTGGCAGGTGAGGCCGCCGACAACGCCGTGACCCTGGAGGACAACCGGATTGCAGACAGCACCCATACGGGGGAGGCAGGGGAGGAAGACCAGGATTCGGAGGAATCGGctgaggaagaagaaggagaggaagaaggaaaCGAGTCAGATTTGAGCTCAGAGTCCAGCATGAAGAAACGATTGAAAAAGAAGGTCAAGAACGACAACCCCTGGCTGCGGCCGTGCAGGAAGCGCAAGAGGAGGAACAGGGCCAAAGCAGATGGGGCTTCAGGTAACGAGGCCGAGTCTCGGGCTGAAAGCAATAAGGAATACACAGAAGTGCCCCTGGAGTCTCTGGACCTGCAGACACAGGAGGAGCTGCTTTCCTCACAGCACACAGGTGTGACTGGGAGCTCCGACACCATGGAAACAGACGCGGTGCAGGAGCTGCCCCTCTGCAGCTGCCGCATGGAGACGCCCAAGAGCCGCGAGATCCTTACGCTGGCCAACAAGAAGTGCATGGCCACCGAGAGCGTGGACGGGCAGCTGAGTCGGTGTCAGAGTGGGGTGCTGAAGCACGAGATGATGCGTCCGTCCAACACCGTGCCACTGCTGGTGCTATGTGAGGATCACCGCGCTGGTATGGTGAAGCACCAGTGCTGCCCGGGCTGCGGTTTCTTTTGCAGGGCGGGCACATTCATGGAGTGCCAGCCCGACAGCAACATCTCCCACCGCTTCCATAAGAGCTGCGCCTCGGTGGTCAGCGGCCTGAGCTACTGCCCTCACTGCGGGGAGGAGGTCAACAAGGCCAAAGAGGTCACCATCGCCAAGGCAGACACCACCTCCATGGTGCCCTTCACCCTGGGGCAGGAGCCGCCCACTGCCACAACCGAGGGCAAGGCGGACACCACCACGGGCGGctCTGCCCGGATGAGACTGAGCAGTGAGGAGAAGGTGGACAGCTCGGCGCCCAAGCCCTCTGAGGTGTCGGAGCCGCCGGGGTCGCCCAGTGGCTCCAGGCCAGGGGGGTTGACCCCGGTcattttgggggtggggggggtgctgggaCCAGCCAAAGAGACCCTGGAGAGCATCCTGTTGGCGCTGGACGCAGAGAAGCCTAAGAAACTCAGATTTCATCCAAAACAGCTCTACATCTCCGCAAAGCAAGGGGAGCTCCAGAAAGTTCTGCTCATGCTTGTGGATGGAATTGACCCAAACTTCAAAATGGAGAACCAGAGCAAGCGCACTCCACTGCACGTGGCTGCAGAGGCGGGGCACAAGGAGATCTGTCACATGCTGGTGCAGGCCGGTGCTAATTTAGATATGTGCGACGAAGACCAGAGGACTCCGCTCATGGACGCCGCAGAGAACAACCACCTGGACACTGTGAAATACCTGCTGAGGGCCGGGGCCATTGTCAACCACAAGAGATTCGAAGCTGCAGGCAGTCCGGTGCAGCACCCAGGGGACCCTCTGTGGTCAGTCTACCGTGTGCTGAAGATTCTCTCGTTGCAGGATGTAGAGGGATCCACGTGTCTGCACCTCGCTGCTAAGAAAGGGCATTACGATGTAGTCCAACACCTGCTGGGCACCGGATTGATAGATATAAACTGTCAGGATGACGGGGGCTGGACGCCAATGATCTGGGCGACAGAGTACAAGCACATCGATGAAGTGAAGCTGCTCCTGTCTCGAGGAGCTGACATCAACATCAGAGACAAGGTCAGTGCCCAGAGAACGACCCTGACCCCTGCCCTTCCCGAAGATGAGGGAGATGCAGCGGATTTGAGGCTGATTTCACTTCTCTTCCCATTAACGACTCCgatcaattatGAGGAGAACATCTGCCTGCACTGGGCGGCGTTCTCGGGCTGCGTGGACATCGCCGACATCCTGCTGCAAGCCCGCTGCGACCTCCACGCCGTCAACATCCACGGGGACTCGCCGCTGCACATCGCCGCCCGCGAGAACCGGCACGACTGCGTGGTGCTGTTCCTGTCCCGCGGAGCCGACGTCAACCTGAAGAACCGGGAGGGCGAGACGCCGCTGGAGTGTAGCAGCCTAAACTCCAAGGTGTGGACGGCGCTGCAGATGAACAAGAAGCTGAAGGAGGCGAGCTCTCACAAGGGCGAGCAGGAGGAGCGCGTGGTCAACAGGGATATCGCCAGGGGCTATGAGAAGGTCCCAGTGCCCTGCGTGAACGGCGTAGACAGTGAGCCCTGTCCCGACAACTACAAATACGTCCCCGACAACTGCGTCACCTCGCCTATGAACATCGACAAGAACATCACGCACCTACAGTACTGTGTCTGTAAGGATGACTGCTCGTCCACCAACTGCATGTGTGGTCAGCTCAGTCTGCGCTGCTGGTACGACAGGGAGGGTCGGTTGTTGCCGGAGTTCTGTCGGGATGAGCCGCCACTGATCTTCGAGTGTAACCATGCCTGCTCCTGCTGGAGGTCCTGCAAGAACCGCGTGGTGCAGAACGGACTGCGGTATGTCGGCGAGATTATATCCGACACGGAGGCTGACGTCAGAGAGGACGACTCCTACTTGTTCGACCTGGACAATAAGGTGGGGGATGTGTACTGCATTGACGCCAGGTTCTACGGGAATATCAGCCGCTTCATAAACCACATGTTCGACTACGGAGACCGTTTCTGGGAGATCAAGAGCAAGTACTTCAGCTGCCAGTGCTGCTCGGCCAAGTGCAAGCACTCGGCGGCAGCCATCGCCCAGAGGCAGGCGGACAGCTCTCCCGAGGAGCCGCAGCGCAGCGCCCTGCCCGACACCAGCTCCTCCACCACCCCCTCCAGCCCTTCCTGAGGCCAGCCGGGCCACACTCAGCCAGCAAAGCCAGCCAGCCAGACAAAGACggacagccagccagccagccagccagccccCAACTTAGCCCCTGGATGTCAGAACATCTCTATAAAGACTCGAACCCCTCACATACTCCTTACTGTCCCCCAGCTGATGAAGACGCCCACACTCTCTTGCTCTGTGCATCAATTCCTCGTGGTGCTGGAGAAAACCATAAGGTCctgacaaaataaagacatgaagGATGGTGATACTGCTAAGGCAGAGGTCTCCATCCCTGGTCCCAGAGAGTGACCGTGTCTTCTGGTGTTGGTTTTCAGCCAGGTCAAGGGCATGCGATCTACAGTCAGTCCTATCAATACCTAAAGGAGCCGGGTTCGACTCCACTggtatgggggtggggggctcaGGATGGTCCCTGTTGGTGTCCTAATATTACTTCCCTGGATGCAGGTGCTCTCAGTAACAAGGTTCATGAAGTGTGAgggttaaagaaagaaaagggctGGAAATTAAACGCAAGCTTTTGGAAAAGACCAGCCAGGGTGTGGGTGTGAAAGGGGCTGGAGTCAGAGTCCTTGCTGGGGTGGTGTGTCTGGATGGTGTGAATGACGTTTTAagctcttattttatttaccacACGTTAAAGTTaacggggg

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 84897 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 287130 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 349126 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 508815 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 593137 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 226177 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 336163 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 467570 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 640245 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 678552 13789391 ~ 13792931 (-) True G61920
AMCG00020203 mRNA downstream 8611 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020199 mRNA downstream 13028 13075718 ~ 13079535 (-) True AMCG00020199
AMCG00020202 mRNA downstream 54498 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020201 mRNA downstream 58854 13029669 ~ 13033709 (-) True AMCG00020201
AMCG00020200 mRNA downstream 74854 12929785 ~ 13017709 (-) True AMCG00020200
AMCG00020205 mRNA upstream 28333 13139172 ~ 13163646 (-) True AMCG00020205
AMCG00020210 mRNA upstream 60147 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020208 mRNA upstream 88881 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020212 mRNA upstream 106157 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020209 mRNA upstream 119169 13230008 ~ 13235396 (-) True AMCG00020209
TU77089 other downstream 94340 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 582626 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 595823 12490698 ~ 12496740 (-) False AMCG00020180
TU77151 other upstream 110761 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 484679 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 553248 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 694181 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 694181 13805020 ~ 13808333 (-) False AMCG00020252

Expression Profile