XLOC_019558 (elmod1)


Basic Information

Item Value
gene id XLOC_019558
gene name elmod1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22099300 ~ 22115192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038516
GTGGTTAGATCACCCTCGAATGTGAGTTATACTGTTGTAGGAAAGCAGATAATCGCGATGAAGCATTTTCTAAGGGTACTGACCCAGTTCCTGGTGTTCCTGTACTGTAAGTGTTTGTGGCGGGGCCTAAAGTTTGTCATCCGGAAGGTGACGGGACGATGTGAGCTTCAACGCATTTGTTACAATAACAAACCTGGCGCTCGAAGGACACTCAAGATTGaaTCCTCACTCCGATGCTCTAAACATGAGCTCTTGCAGTCTGCCATCAGCGTTCATCCAGATTCTGTGGAAAAGTCTATCGATGACATTATGGCCCTGAAAAAGATTAACCTCGACACCAACCCACAGCTTGGCATTTCTCTCCAGGCTTGCCTTCTTCAGATTGTTGGTTACCGAAACCTAGTAGTGGAGGTGGAGAAGCTGCGCAGAGAGCCGTATGACTGTGAAAACCCAGCACACGAGGAGATGCTCATGAAGCTGTGGAAGGAACTCCGTCCCGATTCTCCTCTCTCTGGACGCATCTCAAAGCAGTGGTGTGAGATTGGTTTTCAAGGAAACGACCCCAAGACTGATTTCAGGGGCATGGGTCTCCTGGGCCTACACAACCTGCTgtATTTTGCAGAGCACGACAAAGCCACTGCTCTTCAAGTTCTTCATGACTCCTTGCAGCCCAAACACAGCAAAATGAGCAAAGCTGAATGGGAAAAGAAGAAATTCGACAAAGCGATCGGATACTCTTTTGCTATAGTTGGCATAAACATCACAGATCTGGCCTATTCCCTGCTGGTGAGCGGAGCTCTGAAGACTCATCTGTATAATGTGGCACCAGAGATGCCAAGCCTAGTGCACTTCCAACAGACCTTCTgtTATCTGATGCAGGAGTTTCACAGGTTTTGGATGGAGGAAGACCCATGTGACATCATGGAGTTCAATCGTGTGCGCACCAAGTTCTACAAGCGCGTCCTGAAGCAGCTGAAGAACCCTGACATGGCACTGTGCCCTCACTTCACTGCCTCTGACCTTCACCTGGTCAACCTGTAGCttctcattcatccatccataaaaAACCCATGTCTCATTCACCACACATCCTCACTCCAGCGTCTCCTGAAGATCACCAGCACTGATGCTCGAGACCATGTTGATTGTACGTGCGCATGGCAAAAGTGCACCATCTTTCACAGCGATTGTgatatttacagctactgtacgCTGAAGTGTCCATCAGCATCTGAATGTGGACCCGAGGGCTCCCTATCCaccagtaggtagagctgtcggtACACATTAGGCTTCAGGCACAGAGAGTTTGTACTGCACTGATACCAGGCACACCTAGAAACAGGTGGTCCATCTTTGTATACAGTATCATGTACTTTCAGAGCTGTTATATAAAGGATAATCTTTAGTCCTTGTGAATCTGTTAAAGGAATATTCAAGATTCAGTCaaagttaaaggggtagttcacccaaaactgaaaacctttaggagtttctttattcacaacacaaaagaagatatttttaaattgtatgtgCATTTTGTAATATCGCATACATaatgcttaatggaaatgccaagatgcgcatgcagtttgaaaatttgcataaaaatgtatgTGCACAACTGACTAGGATAAaggttttatttgataaaacaaaatgcattgtaTTATGATGTGCATAAATTACGATGGAAcacatttaatgaataatatccATCAGTCgcatcaaaaaatgtcatttgattttgttttaacagaaaaataagcTCGATGGGACGCATTAATGTAAAAACTAGCAGACCGACCACATTGcataacatctaaaatgttgttttggtcgttagaaaaatccctcagccaaagtctgtcatcaaagtggttaAATATTattaccttcagaactgtcttggGTGTTTGTGCCTACAAAATCTACTGTTCTTTAGGTTGTTTTTCGTCTTGACCTTTCGAGTCGCAAGTTATTTAATATGTATGAAAAAGTCCTACAGTGGCTTCTCTTAGTaaagttttataaacaaatttcgagaggagcacgtcatatgattgatcgcggctggtctCTTATTTGCAATCAttgataaaccaatcagattaatcctaATCTACAATAAATAGCCCATTTAACCCTCCTTCCCTTCGTTTTTGAAGAATCGCACTGTTGACCCCATCtcccaagtgtgaactcttgaaatgcagcAAATTCcagtttcttttttatatttggtgCCAAATTATCAGGAAGCTACAATATTATTGTCTTTGACTCGATGAGTTGAATCTTTGCAAATCTTATTCGCAATTTTTTATGTGCTATCCTAGTTTTGGGcattagtttattttgcatttagaaACCTAGCTATTGACaaccattgtaggaaaaacaaacactgtggaagttaatggttacagttttccagctttcctaaaaatatcttcattcgtgtaaaaacagaaaaaagagagAATAACAGGTTTGTAACAGcataaagggtgagtaaacagaatgttcagttttgggtgaactgtcccttaaaaAAACAACTGTAAAATAACTTCGCAGCCTGctttgctcatatttaccaaggGTGCCAATATTAGTGGAGAGCGCAGTAGACATGCCATGATGGTATACACTTAGAAATGGGAGAAACTATTGCGCAACATGATACCATATGCCCTGCCTTCTAAATAGAATaaagagccaatcatcgattggtGAAGTGATTGTGTCACTTCTGCTGCCAATGGGAGCTTTGGTTCAAAAAGAATCCTGAGATTTGCGTTTAGGGTTATGCACACTGGCTAGACCAAGTTGGTCTGAGCCATTTGAGCATAACAAACAATTAAGGCAGTTCGTGCCAGATTTTATAGCCAATTTTATAAGATCAGATGTGTAATTGTAATTTTGTCAAGTAGTTACTGGGATTTCACTAGTCCTCCTGTTGTAATAGGGGGCTTGGGCTTGTATGACTGTAATCAAGTGCATTAGTATCATATACTTTTTCAGCATCTCTGCTTCTGGAGGTATTTTTCCTGTTCGTTTTTGCCCATATGGATTTTAGAATGCATGTTTTAGAATGTTAAAACCAGCCAGCTACAAGGTGATTCACTACAGACGTTTTTGAAAGCCTGACAGAAAAAGACTAAAGTAAGACTTTAATATTATTGCGAAGGACACAATCAAATAATCAACAgataaatataaaactattgaTTTAAAGTTGTTGGTTGTATCTATAGAAGCAGTGTATTTTGCAATATACAAATATTATGGAGACAGTTATGGGCTGTATAGGAAGAGCAGAGCTAAAGTTTAAAATACATATCTATATTTTTTCACGCACCTCTGATTTTGAAATTGAAAACTTTTCAACTCTCTGATTGGTCGAATTTTCAATGGCATTATGGGTAATGAGGTTTTGTCCCCTGTGATTGTctgaattgatttaaaaataatatgaatgagCTCAAAGTTATTGAGAAAACGAATGAGTTTTTACTTACTGAACCCAACCTGCTGCATTATGCAATTGACAGATGCTGTCAATGGTGTCTAATTTGCATTGAACCTGGAATAATCCTTTGAACAGAAATGATTTCCGcttgctgtatttacatttcattCACCATTCTCATCACCCTCAATCCCATTCAGTCAATTACTATTACGTGTTGCCAAGAAGCAGAGCTTAAAATCAAATATTCACTTGCCAAATACGGTAGGATAATGTGTGTTTTGTGAATGTTCTCATGCAGAGCACATGattgttttacaaatgtaatagTGTTGATGTAAAATATGTggaatgttcttttttttttttttttttcttcagttcttGCACCAAAGCAATAAGTGACGTTTAGAACACCAAGTAGAACAGTTTCTTCTGCACATGTGGTGCCTCTTTTGTGTGAATTAAACACTAATTAGCAGAATTAATGTAGAAATCTAAAGTTCAGCCTTCGGTGTGAGTATTTCAGGCTTTCTTTGGTCTCCTCTGCAGTTCTTTCACTTTTTCACTCTTCACTATCGCATGTTGCTCTTATTTTTGTTTCAGTTTGACCATGAACCCTTTAAATCGATGGACAGTCACAGGGTTTGCATGACAATTTTGTTTTTTCCGCTTGCAAAAATTGTGTTAAAAGAATGTGACTTAATTCTAATGTTGCTAATCTGTGCAATGAATGTCTACACTACCGGCGGTGTTGAGCAGCTTCTTTGAAATagttttttggttgaactgtgttttcacatgatttttaaaatgtgtgacgTGTTGTTTATTTTCCATTGAAGCATTTTTACTGAAGCACTTGCTGTACATAAAGCCTTAGAGGTGGAATACATGCAAACATTATTAAAGCTTATCATTATGCATGGCTGaatggttatgtgtgtgtgttttctttataAACAACTTTGCTGTAAAACTACAGGGTGCTTTTTGAATGATCAGGAAATCATTGATttgagttgttgtttttacatTCAAGCCCATAATAAAAGGCGGCATGAGATTTTAAATTATGTAGACTATGAAGTTAAAAGATATAATTGGTGTTATTTGAAAactttaattgattttttaaacTACTGGGTAAACAGGcttcatgataataataataataaaaagattagCTTTTCGCTATATATTTGTCTTCAGTATCTTGCGTTGC
>TCONS_00038517
GGAGGAATAACAGGTACCTGCCGTACAGAGAGAGGAGGACAGGCATATTCCCATTCCCAGCGACATCTTGAAACGTGGTTAGATCACCCTCGAATGTGAGTTATACTGTTGTAGGAAAGCAGATAATCGCGATGAAGCATTTTCTAAGGGTACTGACCCAGTTCCTGGTGTTCCTGTACTGTAAGTGTTTGTGGCGGGGCCTAAAGTTTGTCATCCGGAAGGTGACGGGACGATGTGAGCTTCAACGCATTTGTTACAATAACAAACCTGGCGCTCGAAGGACACTCAAGATTGaaTCCTCACTCCGATGCTCTAAACATGAGCTCTTGCAGTCTGCCATCAGCGTTCATCCAGATTCTGTGGAAAAGTCTATCGATGACATTATGGCCCTGAAAAAGATTAACCTCGACACCAACCCACAGCTTGGCATTTCTCTCCAGGCTTGCCTTCTTCAGATTGTTGGTTACCGAAACCTAGTAGTGGAGGTGGAGAAGCTGCGCAGAGAGCCGTATGACTGTGAAAACCCAGCACACGAGGAGATGCTCATGAAGCTGTGGAAGGAACTCCGTCCCGATTCTCCTCTCTCTGGACGCATCTCAAAGCAGTGGTGTGAGATTGGTTTTCAAGGAAACGACCCCAAGACTGATTTCAGGGGCATGGGTCTCCTGGGCCTACACAACCTGCTgtATTTTGCAGAGCACGACAAAGCCACTGCTCTTCAAGTTCTTCATGACTCCTTGCAGCCCAAACACAGCAAAATGAGCAAAGCTGAATGGGAAAAGAAGAAATTCGACAAAGCGATCGGATACTCTTTTGCTATAGTTGGCATAAACATCACAGATCTGGCCTATTCCCTGCTGGTGAGCGGAGCTCTGAAGACTCATCTGTATAATGTGGCACCAGAGATGCCAAGCCTAGTGCACTTCCAACAGACCTTCTgtTATCTGATGCAGGAGTTTCACAGGTTTTGGATGGAGGAAGACCCATGTGACATCATGGAGTTCAATCGTGTGCGCACCAAGTTCTACAAGCGCGTCCTGAAGCAGCTGAAGAACCCTGACATGGCACTGTGCCCTCACTTCACTGCCTCTGACCTTCACCTGGTCAACCTGTAGCttctcattcatccatccataaaaAACCCATGTCTCATTCACCACACATCCTCACTCCAGCGTCTCCTGAAGATCACCAGCACTGATGCTCGAGACCATGTTGATTGTACGTGCGCATGGCAAAAGTGCACCATCTTTCACAGCGATTGTgatatttacagctactgtacgCTGAAGTGTCCATCAGCATCTGAATGTGGACCCGAGGGCTCCCTATCCaccagtaggtagagctgtcggtACACATTAGGCTTCAGGCACAGAGAGTTTGTACTGCACTGATACCAGGCACACCTAGAAACAGGTGGTCCATCTTTGTATACAGTATCATGTACTTTCAGAGCTGTTATATAAAGGATAATCTTTAGTCCTTGTGAATCTGTTAAAGGAATATTC
>TCONS_00038518
GAGATTGGTTTTCAAGGAAACGACCCCAAGACTGATTTCAGGGGCATGGGTCTCCTGGGCCTACACAACCTGCTgtATTTTGCAGAGCACGACAAAGCCACTGCTCTTCAAGTTCTTCATGACTCCTTGCAGCCCAAACACAGGGACGTTTCCAAAGAAGAAGCCAGGTACATTTTTTCCTCTCTCAGTAAAAAAACTCATTTGATCATTTTGCCTCAGTCTAATggctatttttt
>TCONS_00038519
CATGCTCATCATGGAGGAATAACAGGTACCTGCCGTACAGAGAGAGGAGGACAGGCATATTCCCATTCCCAGCGACATCTTGAAACGTGGTTAGATCACCCTCGAATGTGAGTTATACTGTTGTAGGAAAGCAGATAATCGCGATGAAGCATTTTCTAAGGGTACTGACCCAGTTCCTGGTGTTCCTGTACTGTAAGTGTTTGTGGCGGGGCCTAAAGTTTGTCATCCGGAAGGTGACGGGACGATGTGAGCTTCAACGCATTTGTTACAATAACAAACCTGGCGCTCGAAGGACACTCAAGATTGaaTCCTCACTCCGATGCTCTAAACATGAGCTCTTGCAGTCTGCCATCAGCGTTCATCCAGATTCTGTGGAAAAGTCTATCGATGACATTATGGCCCTGAAAAAGATTAACCTCGACACCAACCCACAGCTTGGCATTTCTCTCCAGGCTTGCCTTCTTCAGATTGTTGGTTACCGAAACCTAGTAGTGGAGGTGGAGAAGCTGCGCAGAGAGCCGTATGACTGTGAAAACCCAGCACACGAGGAGATGCTCATGAAGCTGTGGAAGGAACTCCGTCCCGATTCTCCTCTCTCTGGACGCATCTCAAAGCAGTGGTGTGAGATTGGTTTTCAAGGAAACGACCCCAAGACTGATTTCAGGGGCATGGGTCTCCTGGGCCTACACAACCTGCTgtATTTTGCAGAGCACGACAAAGCCACTGCTCTTCAAGTTCTTCATGACTCCTTGCAGCCCAAACACAGGTCAGGCTCATTTACAGTACATTGTTTTATCCCTCGAAAAAGCCCGCTAAATTTAACTAATGCACTTTAAGACGCCATTAAGCTTTAAATGCATGAGCAAAAAAGGGGTTTTTGTCATTGAAGCTTTTTATCAGTGTGTTattttatgttgtgtgtgtgcacaccatgcatatttaaaaaaaaaaa
>TCONS_00038520
GCGCTGCATTGCGATGCTGAGAAGCGCCCGCCCTCCCTCATTCACATGCTCATCATGGAGGAATAACAGGTACCTGCCGTACAGAGAGAGGAGGACAGGCATATTCCCATTCCCAGCGACATCTTGAAACGTGGTTAGATCACCCTCGAATGTGAGTTATACTGTTGTAGGAAAGCAGATAATCGCGATGAAGCATTTTCTAAGGTCGGATCACAAATTCATTGCATGCCGATGGGGAGGAGAGTCTATCCTGTGAGCAGTAACTCTCAACGAAATCAGCAGTTGGACTCAAACAGGGTACTGACCCAGTTCCTGGTGTTCCTGTACTGTAAGTGTTTGTGGCGGGGCCTAAAGTTTGTCATCCGGAAGGTGACGGGACGATGTGAGCTTCAACGCATTTGTTACAATAACAAACCTGGCGCTCGAAGGACACTCAAGATTGaaTCCTCACTCCGATGCTCTAAACATGAGCTCTTGCAGTCTGCCATCAGCGTTCATCCAGATTCTGTGGAAAAGTCTATCGATGACATTATGGCCCTGAAAAAGATTAACCTCGACACCAACCCACAGCTTGGCATTTCTCTCCAGGCTTGCCTTCTTCAGATTGTTGGTTACCGAAACCTAGTAGTGGAGGTGGAGAAGCTGCGCAG
>TCONS_00038521
CGCCACTGACGACCTCGAGACATCCTGGCTATTTGTATCCACGACTGCTGAATGCAGCAATATTATGATTAAATAAAGATACACTGtggatttgttttcaattgtgTTTGTGCAGGTGGTTAGATCACCCTCGAATGTGAGTTATACTGTTGTAGGAAAGCAGATAATCGCGATGAAGCATTTTCTAAGGGTACTGACCCAGTTCCTGGTGTTCCTGTACTGTAAGTGTTTGTGGCGGGGCCTAAAGTTTGTCATCCGGAAGGTGACGGGACGATGTGAGCTTCAACGCATTTGTTACAATAACAAACCTGGCGCTCGAAGGACACTCAAGATTGaaTCCTCACTCCGATGCTCTAAACATGAGCTCTTGCAGTCTGCCATCAGCGTTCATCCAGATTCTGTGGAAAAGTCTATCGATGACATTATGGCCCTGAAAAAGATTAACCTCGACACCAACCCACAGCTTGGCATTTCTCTCCAGGCTTGCCTTCTTCAGATTGTTGGTTACCGAAACCTAGTAGTGGAGGTGGAGAAGCTGCGCA

Function

symbol description
elmod1 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity. Orthologous to human ELMOD1 (ELMO domain containing 1).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-262 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity. Orthologous to human ELMOD1 (ELMO domain containing 1).

Ensembl:

ensembl_id ENSDARG00000062056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038516 False 4703 mRNA 0.38 10 22099300 22114625
TCONS_00038517 False 1511 mRNA 0.48 11 22102566 22115136
TCONS_00038518 False 236 processed_transcript 0.44 3 22106686 22109813
TCONS_00038519 False 952 mRNA 0.46 8 22106909 22115148
TCONS_00038520 False 650 mRNA 0.49 7 22110051 22115192
TCONS_00038521 True 542 mRNA 0.46 5 22110052 22114740

Neighbor

gene id symbol gene type direction distance location
XLOC_019557 NA coding downstream 17246 22073949 ~ 22082054 (-)
XLOC_019556 defbl2 coding downstream 271039 21826529 ~ 21828261 (-)
XLOC_019555 wdr73 coding downstream 275015 21819878 ~ 21824285 (-)
XLOC_019554 xrra1 coding downstream 308202 21790606 ~ 21791098 (-)
XLOC_019553 xrra1 coding downstream 308928 21782331 ~ 21790372 (-)
XLOC_019559 slc35f2 coding upstream 614 22115806 ~ 22122312 (-)
XLOC_019560 ompb coding upstream 72818 22188010 ~ 22189719 (-)
XLOC_019561 gdpd4b coding upstream 196772 22311964 ~ 22325124 (-)
XLOC_019562 NA coding upstream 210435 22325627 ~ 22327636 (-)
XLOC_019563 skp2 coding upstream 231928 22347120 ~ 22359336 (-)
XLOC_019538 NA non-coding downstream 673789 21405218 ~ 21425511 (-)
XLOC_019535 NA non-coding downstream 920549 21162410 ~ 21178751 (-)
XLOC_019534 NA non-coding downstream 939905 21157734 ~ 21159395 (-)
XLOC_019531 NA non-coding downstream 1136111 20958898 ~ 20963189 (-)
XLOC_019564 NA non-coding upstream 246842 22362034 ~ 22375102 (-)
XLOC_019565 CU466287.1 non-coding upstream 255838 22371030 ~ 22371136 (-)
XLOC_019566 NA non-coding upstream 269935 22385127 ~ 22399013 (-)
XLOC_019596 NA non-coding upstream 1000152 23115344 ~ 23132318 (-)

Expression


Co-expression Network