XLOC_019587 (angptl5)


Basic Information

Item Value
gene id XLOC_019587
gene name angptl5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22820970 ~ 22831388 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038565
TGCCTGTGAAGTGACATTTGACTTCTCAGCAGACCAGCCCACAAGACAACACAGAAGACGATGTCCATCTCTTTGGAAAGTGCACGTCTGCACACTGTCACATGTGGGACTGCTACATACACCAGGATGATCTGGATCACTTTATTTCTGCCTCTTCTTGCATCATTAACTGTGAATGGCAACACAGTGGCTACATTAACTGAAGAGTTAGAGGATGTTTCTCCCCAAGAGCAAAAACTATATTATCACAAAGAACCAAGCAAAGACAAATGCACCATGCCATGTGAAATGACTGCAAAGCTAATGCGTGATGAGAAACACTCCTTGTGCACAAACCTCCAGCATACCATGGTGTCATATACAAGAAACACAAGGAAGCTGATTAGAGATCTCATTGAGGAACAGCAGAAGGCTTTGGAATTCCTATCAAGCCAGATAATTGATCTCATGGCCAAAGTGAATACGCTCAGTTCAGATGTGCAGAGAAGCAACAGTGACATCTTTTCTGTAAAGCCCATGGAGTCCCACGGGAAAGACTGCAGTGACATAAAAGAAACACTAGGTGCCGTTTCCCCAAAAATCCCAAGTGGAATTTACATAATTCAGCCAGAAAACACAGATGTTTCGTTTGAGGTGTTTTGTGAGATGGACGACATGGAGGGAGGATGGACAGTGATACAAAGGCGGACAGACGGTCTCACTGACTTTAAACGAATGTGGTCACAGTACTTGGATGGATTTGGACACTTACCAGGTGAACACTGGTTGGGTTTGAGGAAGATCTTCAGTATTGTGAATCAAAGAAACACACGTTTCCAGCTGCACGTGTCTCTGATCTCACAAGATGAATCCACGGCCTATGCTTCATATGATAGTTTCTGGATTGAAGACGAAACCAAATTCTTCGCAATTCACCTTGGCAGATACGCTGGTAGTGCAGGAGATGCATTCCGTGGGTATGACCAAGAGCAGAATCAAGACACTGCCCCTTTCAGTACCACTGATGTGGACAACGATGGCTGTTCTCCATTCTGCACTTTTGGGGATAAAGCTGTTGAGAGCTGCAGTGTGAACCAGAACAACACCGGATGGTGGTTTAACCAGTGTGGAACGGCAAATTTGAATGGCTCGCCAATGGAACAGGACTTTTCCACCCACTCAGATATCCACTGGGACACCTGGACCAAAAATGGCACACTTGTCCAAATCAAATCAGTGACTATGAAGATCAGAAGAGTTGAGATCCCGAATTTAAAATAAGCATCTGTAAATGATGCACTGAAATGGAACAAGTTGTTTTTTGAACTATAGAACTTGCAccctatgtttttatttttattttttttccttttttgaaaCATGACTAAGGGCATCATCCAATAACTTCATCCTCATTCAATCCAAGGCGTAAACCTCCAGCTTCTTTGTAAGCCTCTGTTCATCATTATGAACTATGAATATATGACATAGTATGACAGAGATATTGCATCCacatt
>TCONS_00038566
ATGTCCATCTCTTTGGAAAGTGCACGTCTGCACACTGTCACATGTGGGACTGCTACATACACCAGGATGATCTGGATCACTTTATTTCTGCCTCTTCTTGCATCATTAACTGTGAATGGCAACACAGTGGCTACATTAACTGAAGAGTTAGAGGATGTTTCTCCCCAAGAGCAAAAACTATATTATCACAAAGAACCAAGCAAAGACAAATGCACCATGCCATGTGAAATGACTGCAAAGCTAATGCGTGATGAGAAACACTCCTTGTGCACAAACCTCCAGCATACCATGGTGTCATATACAAGAAACACAAGGAAGCTGATTAGAGATCTCATTGAGGAACAGCAGAAGGCTTTGGAATTCCTATCAAGCCAGATAATTGATCTCATGGCCAAAGTGAATACGCTCAGTTCAGATGTGCAGAGAAGCAACAGTGACATCTTTTCTGTAAAGCCCATGGAGTCCCACGGGAAAGACTGCAGTGACATAAAAGAAACACTAGGTGCCGTTTCCCCAAAAATCCCAAGTGGAATTTACATAATTCAGCCAGAAAACACAGATGTTTCGTTTGAGGTGTTTTGTGAGATGGACGACATGGAGGGAGGATGGACAGTGATACAAAGGCGGACAGACGGTCTCACTGACTTTAAACGAATGTGGTCACAGTACTTGGATGGATTTGGACACTTACCAGGTGAACACTGGTTGGGTTTGAGGAAGATCTTCAGTATTGTGAATCAAAGAAACACACGTTTCCAGCTGCACGTGTCTCTGATCTCACAAGATGAATCCACGGCCTATGCTTCATATGATAGTTTCTGGATTGAAGACGAAACCAAATTCTTCGCAATTCACCTTGGCAGATACGCTGGTAGTGCAGGAGATGCATTCCGTGGGTATGACCAAGAGCAGAATCAAGACACTGCCCCTTTCAGTACCACTGATGTGGACAACGATGGCTGTTCTCCATTCTGCACTTTTGGGGATAAAGCTGTTGAGAGCTGCAGTGTGAACCAGAACAACACCGGATGGTGGTTTAACCAGTGTGGAACGGCAAATTTGAATGGCTCGCCAATGGAACAGGACTTTTCCACCCACTCAGATATCCACTGGGACACCTGGACCAAAAATGGCACACTTGTCCAAATCAAATCAGTGACTATGAAGATCAGAAGAGTTGAGATCCCGAATTTAAAATAA
>TCONS_00038567
ATGGCCAAAGTGAATACGCTCAGTTCAGATGTGCAGAGAAGCAACAGTGACATCTTTTCTGTAAAGCCCATGGAGTCCCACGGGAAAGACTGCAGTGACATAAAAGAAACACTAGGTGCCGTTTCCCCAAAAATCCCAAGTGGAATTTACATAATTCAGCCAGAAAACACAGATGTTTCGTTTGAGGAAAGTACctccttttattttgtttagaaatttcCAACCACGGTTATTTTAATCTAACAGCAAATTACAGATGAAAAATGAAGTGTGTTGAACTGGCTGTTTAATAGGTGTTTTGTGAGATGGACGACATGGAGGGAGGATGGACAGTGATACAAAGGCGGACAGACGGTCTCACTGACTTTAAACGAATGTGGTCACAGTACTTGGATGGATTTGGACACTTACCAGGTGAACACTGGTTGGGTTTGAGGAAGATCTTCAGTATTGTGAATCAAAGAAACACACGTTTCCAGCTGCACGTGTCTCTGATCTCACAAGATGAATCCACGGCCTATGCTTCATATGATAGTTTCTGGATTGAAGACGAAACCAAATTCTTCGCAATTCACCTTGGCAGATACGCTGGTAGTGCA
>TCONS_00038568
gCCTTACggggtgatgcggtggcgcagtgggtagcacattcgcgtcacagcaagaaggtcactggttcgagccttggctgaGCAGACCAGCCCACAAGACAACACAGAAGACGATGTCCATCTCTTTGGAAAGTGCACGTCTGCACACTGTCACATGTGGGACTGCTACATACACCAGGATGATCTGGATCACTTTATTTCTGCCTCTTCTTGCATCATTAACTGTGAATGGCAACACAGTGGCTACATTAACTGAAGAGTTAGAGGATGTTTCTCCCCAAGAGCAAAAACTATATTATCACAAAGAACCAAGCAAAGACAAATGCACCATGCCATGTGAAATGACTGCAAAGCTAATGCGTGATGAGAAACACTCCTTGTGCACAAACCTCCAGCATACCATGGTGTCA

Function

symbol description
angptl5 Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human ANGPTL5 (angiopoietin like 5).

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5054 Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human ANGPTL5 (angiopoietin like 5).

Ensembl:

ensembl_id ENSDARG00000056630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038565 False 1496 mRNA 0.43 9 22820970 22828593
TCONS_00038566 False 1200 mRNA 0.44 8 22821206 22827548
TCONS_00038567 False 599 lncRNA 0.42 3 22821680 22824734
TCONS_00038568 True 410 mRNA 0.48 4 22824902 22831388

Neighbor

gene id symbol gene type direction distance location
XLOC_019586 trpc6a coding downstream 8521 22801257 ~ 22812449 (-)
XLOC_019585 fbxo40.2 coding downstream 83742 22731566 ~ 22737228 (-)
XLOC_019584 fbxo40.1 coding downstream 90138 22726759 ~ 22730832 (-)
XLOC_019583 c1qa coding downstream 95990 22721957 ~ 22724980 (-)
XLOC_019582 c1qc coding downstream 100589 22717824 ~ 22720381 (-)
XLOC_019588 polq coding upstream 19810 22851198 ~ 22896108 (-)
XLOC_019589 ccdc90b coding upstream 57501 22888889 ~ 22892124 (-)
XLOC_019590 guca1d coding upstream 75091 22906479 ~ 22910530 (-)
XLOC_019591 dub coding upstream 85833 22917221 ~ 22951646 (-)
XLOC_019592 rb1 coding upstream 129347 22960735 ~ 23017478 (-)
XLOC_019566 NA non-coding downstream 421957 22385127 ~ 22399013 (-)
XLOC_019564 NA non-coding downstream 445868 22362034 ~ 22375102 (-)
XLOC_019565 CU466287.1 non-coding downstream 449834 22371030 ~ 22371136 (-)
XLOC_019562 NA non-coding downstream 493334 22325627 ~ 22327636 (-)
XLOC_019557 NA non-coding downstream 738916 22073949 ~ 22082054 (-)
XLOC_019596 NA non-coding upstream 283956 23115344 ~ 23132318 (-)
XLOC_019597 NA non-coding upstream 314903 23146291 ~ 23154522 (-)
XLOC_019600 CR936479.1 non-coding upstream 1014149 23845537 ~ 23910203 (-)
XLOC_019603 NA non-coding upstream 1847662 24679050 ~ 24686215 (-)
XLOC_019606 NA non-coding upstream 2385002 25216390 ~ 25226888 (-)

Expression


Co-expression Network