RNA id: TCONS_00038568


Basic Information

Item Value
RNA id TCONS_00038568
length 410
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_019587
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22820970 ~ 22831388 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gCCTTACggggtgatgcggtggcgcagtgggtagcacattcgcgtcacagcaagaaggtcactggttcgagccttggctgaGCAGACCAGCCCACAAGACAACACAGAAGACGATGTCCATCTCTTTGGAAAGTGCACGTCTGCACACTGTCACATGTGGGACTGCTACATACACCAGGATGATCTGGATCACTTTATTTCTGCCTCTTCTTGCATCATTAACTGTGAATGGCAACACAGTGGCTACATTAACTGAAGAGTTAGAGGATGTTTCTCCCCAAGAGCAAAAACTATATTATCACAAAGAACCAAGCAAAGACAAATGCACCATGCCATGTGAAATGACTGCAAAGCTAATGCGTGATGAGAAACACTCCTTGTGCACAAACCTCCAGCATACCATGGTGTCA

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5054 Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human ANGPTL5 (angiopoietin like 5).

Ensembl:

ensembl_id ENSDART00000151040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038567 lncRNA downstream 168 22821680 ~ 22824734 (-) False XLOC_019587
TCONS_00038557 lncRNA downstream 115651 22706375 ~ 22709251 (-) True XLOC_019580
TCONS_00039244 lncRNA downstream 376381 22446963 ~ 22448521 (-) False XLOC_019568
TCONS_00038536 lncRNA downstream 425889 22385127 ~ 22399013 (-) True XLOC_019566
TCONS_00038534 lncRNA downstream 449800 22365333 ~ 22375102 (-) False XLOC_019564
TCONS_00039637 lncRNA upstream 283956 23115344 ~ 23132318 (-) True XLOC_019596
TCONS_00039638 lncRNA upstream 314903 23146291 ~ 23152236 (-) False XLOC_019597
TCONS_00039639 lncRNA upstream 319688 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00038598 lncRNA upstream 1014149 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA upstream 1069535 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00038563 mRNA downstream 12453 22801257 ~ 22812449 (-) False XLOC_019586
TCONS_00038564 mRNA downstream 12485 22801293 ~ 22812417 (-) True XLOC_019586
TCONS_00038562 mRNA downstream 87674 22731566 ~ 22737228 (-) True XLOC_019585
TCONS_00038561 mRNA downstream 94070 22726759 ~ 22730832 (-) True XLOC_019584
TCONS_00038560 mRNA downstream 99922 22721957 ~ 22724980 (-) True XLOC_019583
TCONS_00038569 mRNA upstream 19810 22851198 ~ 22871901 (-) False XLOC_019588
TCONS_00038570 mRNA upstream 30932 22862320 ~ 22896108 (-) False XLOC_019588
TCONS_00038571 mRNA upstream 35442 22866830 ~ 22869802 (-) True XLOC_019588
TCONS_00038572 mRNA upstream 57501 22888889 ~ 22892124 (-) True XLOC_019589
TCONS_00038573 mRNA upstream 75091 22906479 ~ 22910520 (-) False XLOC_019590
TCONS_00038535 other downstream 453766 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038533 other downstream 462687 22362097 ~ 22362215 (-) False XLOC_019564
TCONS_00038532 other downstream 465566 22356807 ~ 22359336 (-) True XLOC_019563
TCONS_00038530 other downstream 466973 22353998 ~ 22357929 (-) False XLOC_019563
TCONS_00038581 other upstream 206778 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038594 other upstream 535831 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038595 other upstream 577699 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038597 other upstream 720635 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038618 other upstream 2621202 25452590 ~ 25463364 (-) True XLOC_019612

Expression Profile

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