RNA id: TCONS_00038534


Basic Information

Item Value
RNA id TCONS_00038534
length 2675
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_019564
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22362034 ~ 22375102 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCGTTCTCGGCCAATAGGAGCCAATGAAACAATTCATCGACCAGCCAATGGGCGGCGGTGATAAAGCAGTGAAACAAATCATCAACCAGCCAATGGACGACAAAGCAGTGAAACAATTCGTCAAGTCGTTGTCTTAAATGAAGAATTATTTAAGCAGCTTCAGTTCAGTTTAAAACTAAGATGCAGCGTCAAATTGTCGGCTGTAAACAAGAGGAACCGCAGATAAGCGTGTTGGAGCTGGAttggctgcggccctccagataCTGAGTTTGATGCCTGTGCATCAGATGGCAACATGCTTCAAGTCTCTCAGCGTTTCTCCAGCCTCGGTCATTCAGTAAGACGAGTTTCCTGCTCTCGGCGTCTTTTGTTCTGGTCATCAAGGAGGGGGGAATGTTCTGCGCATGCCTGTGGGGGAGGGAGAAGGACACGTCACTGAAAACGTCCCTGCATCACACCGAGACACCCAATCACTCAAGCCGAGACCAGATAATTTTGCATATGCTTTACAGTTTGAAAAATACCACGGGGCTGACACTTTCAGCAAAGATACTGTTCGGGAATGGGCATGTTTCTGGGTCACAGCCTGTTCTTTGTCTGCCCTGGAGCCAAGCTGCAGATCTCAAGCCCAATGGAGGAGTTGGTATTAAACAtgctgtgattcctgtccagaTGCATCCTTGCATTTTTTGAGGTTGAGTGCTCATGCTGGATGGACTCTGGATGCTTTGACTGCACAGGTTGGAGAGAAGTTCAGAGCAGCTTAGCTGGTCCACTGCTTTCACTAAGAACACAGTCGTGAAAAAGATTCATTGTTTTCATTGTAACAATAGCAAAGAATTGTTACAGGAATCAGCTGAACGTTGGTCCCACTCGCAAAATATTGTAGTAACCATATGGTTGTCTGCCTTTGTCCTAGTTCACCTCGAAGACTTGTTCTCCTCATGTATCAATTATTTTCCTTGTCTGTTTTGTCAATCCTTACTTCCACCATTCACTGTGCCAGCCTTCCCAGAGGCCTTTGCACAGAAGTAGACAACCCAAAACTAGTTGTGACTAAACTCTTTACTGTTTGGTTGGCCATACTTTTGCCGAAAGGAACgttttattcagttattttaaGCCTTAATCCAGAGTCAAGCCAGGTGCTGCAGCTGTCTCTGCCAGCTCTTTCTGCTGGGCACCACTTCATTACCTATCGCTGCAACACATTTGTGGGCTCAAACACAAATCCTCAACCCCCCCCCATCATCTTCCAGATCATCATCCAAAGTCCCATCTGCAATATCTGCATCTGCAGCAAAGTACTCAAGTGTTTTACTGGTTTAAGAATGCAAATACTCCACAGCAATATACTCAactgtaaaaatgtatcaaaCAGGTGTTCTAACAACAGATGCAGCTAAGGAACATGTGTACATGCACAACCCATGTATTCACCTTGGCCACTGTAGCATATGTCTTCCTACTAACACCTGAAACAGCATGTGCCTTGTTTAACTAGACCAGCCTTTCCAACTGGTACGCTTGGAAATGCAATGCCCTTGTGTACCTACAAACTAATTCTGAAGTCATCGCTATGACATTTACAAGCAGTGCAAAAGAACACACTGTTTAGTTTTGAGTTATCTTAATATAAACCTGGTCAAAAGTGGTTCAAGTGCAGGTTGGGCAACTACATTTTTATGTGTGGCGTGTGCACAGTGGAACAGAAGCAGAAAGACCCTTTACTTGGTGACCTGTCCTGTCTTTCTGTACAGCTGTACTCCTGGATCATCCTGGATACATTCAATGTGGCACTGGAGGGACAGCCAGGTCTCCTGAATCATCTTGTTGAAGCTTTATTTGACTGGTGTCTGTTACTGCTTTGACTTCTGTGCCCCACAAATGCGGCAGTGTCAAcgacttacattttttttcttgccaGCTGTGTAAATCAATTTGACCAGCCATGTCAGGGATGATAATGAAAGACGGAAGAAAGTTTTGTTCCAGCGGAAGTTTACATTTTGGCTACTTTGTAAGGAGAGATTTctacttaagtatcatacttagaggAAAAATGTGCTTAAAGCCTTATAAAGCTCGGTACTCCGTATTGGCTGATCACTATTGGTAAAATCCTAATCATCCCTAATAACATCCACATTTTTGAATGGAGTGAAAATATGTCTTGTCCTTGATCATTTTTtcattacacaaataaataagtgGCCAAAACTCACCCTGTGGCTCCACCTCCATGGCTTCATCTTCAGGACACAAAATTGAAAATGTCACTCATAATTATGTTTAAGCATGCAAAGAATTTTATCAGGAATAGATCTAAAAGTGCACTTTGCTGTGGTTTTCTTGAAATGTGAGCTTTGAGTCAGAGCACGAGGGGCCAGACGTGAAGGGTGCGGGACCAGCAGCTGGGATGCAAAAGGTTTTCTTTCCTCTTCAGCTCTAATCTTCTGCTGGTCTTTCTGCGGCATGTACTGTTTTAGGGCATCCATCTTGCTGCCCGTTTTGGTGTTCTGACACCTGATGTACTTCACATAGCTGTCGTCAAGTGTCTTAATCAATAATGCCCAGAACTTCTAACAGTAATTCATGCCTGAAgtggttttaaaataaatgaagtgtAAAAAGGTCATTTATTCCTCTGATGGCAAATGACTGCACTTTGTA

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039631 lncRNA downstream 37697 22325627 ~ 22327636 (-) True XLOC_019562
TCONS_00039629 lncRNA downstream 283279 22073949 ~ 22082054 (-) False XLOC_019557
TCONS_00039630 lncRNA downstream 283985 22077450 ~ 22081348 (-) True XLOC_019557
TCONS_00039628 lncRNA downstream 754460 21596003 ~ 21610873 (-) True XLOC_019540
TCONS_00039243 lncRNA downstream 939822 21405218 ~ 21425511 (-) True XLOC_019538
TCONS_00038536 lncRNA upstream 10025 22385127 ~ 22399013 (-) True XLOC_019566
TCONS_00039244 lncRNA upstream 71861 22446963 ~ 22448521 (-) False XLOC_019568
TCONS_00038557 lncRNA upstream 331273 22706375 ~ 22709251 (-) True XLOC_019580
TCONS_00038567 lncRNA upstream 446578 22821680 ~ 22824734 (-) False XLOC_019587
TCONS_00039637 lncRNA upstream 740242 23115344 ~ 23132318 (-) True XLOC_019596
TCONS_00038528 mRNA downstream 7348 22347120 ~ 22357985 (-) False XLOC_019563
TCONS_00038529 mRNA downstream 7788 22352310 ~ 22357545 (-) False XLOC_019563
TCONS_00038527 mRNA downstream 40209 22313252 ~ 22325124 (-) True XLOC_019561
TCONS_00038526 mRNA downstream 47373 22311964 ~ 22317960 (-) False XLOC_019561
TCONS_00038525 mRNA downstream 47413 22311964 ~ 22317920 (-) False XLOC_019561
TCONS_00038537 mRNA upstream 54407 22429509 ~ 22435957 (-) True XLOC_019567
TCONS_00038538 mRNA upstream 71138 22446240 ~ 22543611 (-) False XLOC_019568
TCONS_00038539 mRNA upstream 71859 22446961 ~ 22547496 (-) False XLOC_019568
TCONS_00038540 mRNA upstream 73893 22448995 ~ 22547496 (-) False XLOC_019568
TCONS_00038541 mRNA upstream 82912 22458014 ~ 22474362 (-) False XLOC_019568
TCONS_00038533 other downstream 3118 22362097 ~ 22362215 (-) False XLOC_019564
TCONS_00038532 other downstream 5997 22356807 ~ 22359336 (-) True XLOC_019563
TCONS_00038530 other downstream 7404 22353998 ~ 22357929 (-) False XLOC_019563
TCONS_00038531 other downstream 7452 22354223 ~ 22357881 (-) False XLOC_019563
TCONS_00038518 other downstream 255520 22106686 ~ 22109813 (-) False XLOC_019558
TCONS_00038581 other upstream 663064 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038594 other upstream 992117 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038595 other upstream 1033985 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038597 other upstream 1176921 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038618 other upstream 3077488 25452590 ~ 25463364 (-) True XLOC_019612

Expression Profile

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