RNA id: TCONS_00039637


Basic Information

Item Value
RNA id TCONS_00039637
length 977
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_019596
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 23115344 ~ 23132318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCATGTTTATTAATGGTAATTTATTTCCATAAGACAGTTTCTTCCCTTTAAGTGCaatgaaaaatgctaaatatttcagCGTTATTATTGACAAAAAGCAAAAGATTATATACAAATACAAGTTTCTTTACATCAAAAATCACACACTACACAAAAACAACTTGCTCACAGCTATTTTATATTCCAAAAGGAAAAGTTCAGGTACCAGCTACTATATATTTGTCTCAGTatgcaaacaatattttttttgttaattttctttttaattttctttttttagtcaATTTACTCAAGTATAATTAATCTCCTAATACTAATGACTGAAATgcattaaaactttaaaactaaTGTTAAGAATGATGTTTAGcctgtaatttttttacagtagaaactTATTGGATGAACCTGTGATCcttgattcataaaatgcacatttatgGCATTTTAAGAGTCCAAAAGCTTCAGATGATACATTGAGATCTTATGTTACATAATAAGTATGCAGCAAGAAACTAGCCATTATTCAcagcattttttttctataatccAAAACCTCTTCAAATGTTCTGGAACAGTGGTTGTGAGACAACTTTTAAGGGTTGGGTGTGGgggataaattaaaaaaaaatgaagtgtaaCTATACCCTTAAACTCTCTGCttttgtgtttctctttctcttttcatTACAGCTCTTCTTTACCACCGGATTTAGACTTTCAGGCTGAGCTCCAGGAATGCCACAGCAGCAGTAGGGTCATAACATAGATGAAGACGAGAAGCAAGTAGATGCAGAAGAGCAATTTGTCTACTTTCAGACACAGCTGCACCCAGTAAGACTGTGACGTGGCCTCTGTGTCCTCCTCCTGCAGGTACAGTCTGAGAGACATCACCTCCTGTAGAATCTTCTCCAGTGGAGACTCACTGCTGGACACTTCAGTCAGAGAGAACAGgaACTGACATTTGTGTGGAAGGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038567 lncRNA downstream 290610 22821680 ~ 22824734 (-) False XLOC_019587
TCONS_00038557 lncRNA downstream 406093 22706375 ~ 22709251 (-) True XLOC_019580
TCONS_00039244 lncRNA downstream 666823 22446963 ~ 22448521 (-) False XLOC_019568
TCONS_00038536 lncRNA downstream 716331 22385127 ~ 22399013 (-) True XLOC_019566
TCONS_00038534 lncRNA downstream 740242 22365333 ~ 22375102 (-) False XLOC_019564
TCONS_00039638 lncRNA upstream 13973 23146291 ~ 23152236 (-) False XLOC_019597
TCONS_00039639 lncRNA upstream 18758 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00038598 lncRNA upstream 713219 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA upstream 768605 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00039640 lncRNA upstream 768744 23901062 ~ 23910203 (-) True XLOC_019600
TCONS_00038584 mRNA downstream 4414 23050310 ~ 23110930 (-) False XLOC_019595
TCONS_00038583 mRNA downstream 4414 23050310 ~ 23110930 (-) False XLOC_019595
TCONS_00038582 mRNA downstream 4414 23050310 ~ 23110930 (-) False XLOC_019595
TCONS_00038585 mRNA downstream 4503 23050915 ~ 23110841 (-) True XLOC_019595
TCONS_00038580 mRNA downstream 68738 23036314 ~ 23046606 (-) False XLOC_019594
TCONS_00038586 mRNA upstream 27067 23159385 ~ 23308286 (-) False XLOC_019598
TCONS_00038587 mRNA upstream 27067 23159385 ~ 23331619 (-) False XLOC_019598
TCONS_00038588 mRNA upstream 31798 23164116 ~ 23305561 (-) False XLOC_019598
TCONS_00038589 mRNA upstream 171945 23304263 ~ 23307653 (-) False XLOC_019598
TCONS_00038590 mRNA upstream 171945 23304263 ~ 23307796 (-) True XLOC_019598
TCONS_00038581 other downstream 74137 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 744208 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038533 other downstream 753129 22362097 ~ 22362215 (-) False XLOC_019564
TCONS_00038532 other downstream 756008 22356807 ~ 22359336 (-) True XLOC_019563
TCONS_00038530 other downstream 757415 22353998 ~ 22357929 (-) False XLOC_019563
TCONS_00038594 other upstream 234901 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038595 other upstream 276769 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038597 other upstream 419705 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038618 other upstream 2320272 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 2473215 25605533 ~ 25613197 (-) False XLOC_019617

Expression Profile

//