RNA id: TCONS_00038583


Basic Information

Item Value
RNA id TCONS_00038583
length 4821
RNA type mRNA
GC content 0.48
exon number 25
gene id XLOC_019595
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 23050310 ~ 23110930 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACGTTTCCCAGCACGCGCACTTGAGCGTTTGTCCCTCTCGGCATTTGTGCacttgtgtgggtgtgtgtgtgtgtccgtgggGCATATGGAGTAGGTCACACTCTGGATTCAGGGCGAATCAGTCtggagaattatttataaaagagATATTGCCATGAGAGTTGAACAAGAATTTGAACATGGGGAAACGTCTGAAAACTCGAGCCAAATGCTACTTAACCAGCTCAGAGAGATTACTGGCATTCAGGATCCGCAGGTTCTCCAAAGCGCCCTGAACGCCGGTCAGGGTGACATCAGCCATGCCATTGGGCTCCTGACCACTCAGCCCCCAGAAGAGGAGCACATGCCAGAGCAAACCACCACAGCCAATAATGAGAAGAACACCTCCAGTGCACAGAACGGACCTGCTAAAGATGATCTGCAGACTGCCATTGAGCTGAGTCTACAGGAGTCACAGCAGGCCGAAGCAGAGCGGAGAGAGCTGCACAGGGCTCTGGAGGTCAGCGCAGAGGAGAATGCGGCCCGTATTAAGAGGAAAAGGTGTGAGGGGTCTGGAGAAAGCTGCAGTCCCGCTGAATGGATCCGGCAGGAAGACTGTCCCGTGGGTATCCGAAATGTAGGAAACACCTGCTGGTTCAGTGCTGTCATACAGTCTCTGTTCCACCTGCCAGTCTTTCGTAGGCTGGTCCTCAACTACTGTCTGTCTGAGCGTGTGCTGGAGAAATGCAAGAGTCATTCAGAGAAAAGAAACATTGCCTTTATGCAAGAGTTGCGATGTTTGTTTGCTCTGATGGTCGGCTCGAACCGCAGGTTTGTCGACCCGTCTGCAGCAGTGGAGCTTCTCAGGGACGCGTTCAGAACCAGCGAAGCACAACAGGATGTCAGTGAATTCACACACAAGTTGCTTGACTGGCTGGAGGACGCCTTCCAGCTGGCTGCTAATGGAACTAACCCAGAGGATAAACAAAACAACCCCATGGTCCAGCTGTTTTATGGCACATTTGTGGCTGAGAGGCTTCATGAAGGAGAGATTGTGTCCAACATCGAGCAATTCGGACAATACCCTCTCCAAGTGAACGGCTTCAATAATTTAGATGAATGTTTGGAGGGGGCAATGGTTGAGGGAGAGATTGAGTCTCTTCATTCAGATCAGACACTCTCCTCCGGCCAAGAGGTCAGTTTTACCTCGTGCTACAGTTGTATGGACGTCGTgggtttatttattaatgtgaaGTATGCACATGCTGCTATTATGGATTCAGGTTTGTGTCTTTGTTCACAGAGGTGGTTCTCCAAGCTGCCGCCAGTGTTGACCTTTGAACTGTCCAGATTTGAGTTCAATCAGTCTTTGGGGCGACccgaaaaaatacacaaaaaactggAGTTTCCCCAAGTGATCTACATGGACAGATACCTTCACAAAAATGTCAATCAGACTCACGGCAGGAGAGGAGAGGTCAAGAGACTCAAGGACCAGTTAACACTTCTACAGCAGAAGCTTGAGGGATATAAAAACTACGGCTCAGGGCCAGCCAAATACCCTCTGGCAGACATGTTGCAGTATGTCCTAGAGTTTGCCACCACAAAACCCACAAATCCAGGTTCACCAGTACCTACAAACCCTCCCATAAGCACAGATCCCAGCTCAGGTGACAGCAGTCAAACAGAAGCAGATGATGCCGGCTCGTCAGATGGTTCGGGCTGCCCGCCGACAGCGACGCAGAGAACGCCCATCCACAAGCCTTTTACTCAGTGCAGACCCCCTATGGAGGTGCCAGTGCAGCCGGCGCCACACAGCGTGAGCGAGGAGGAGCTGCACTTCATCAGGAGCTGCTTACAGCGCTGGAGAGCTGAAGTGGAGAACACTATAAGTGAGCTGAAAGCCAGCATTGACAAGGTCAGCCAGGCCCTGGAGGGCATGTACTCAGATAACAGTCTGTGTCAGGTGCCCTATAGACTACACGCTGTGCTCGTTCACGAAGGACAGGCCTCCGCTGGACATTACTGGGCCTATATTTATGATCACGCTCAAAGACGCTGGCTGAagtataatgatgtattggtGGCGGAGTCGACCTGGGAAGAGCTGGTTCGAGACTCGTACGGTGGCATGACCAACGCTAGCGCCTACTGCCTCATGTACATCAATGACAATCTGCCGTACCTCATAGCAGAGGACACAGACGTTGAAACTGGGCAGGTTCTGAAAGGAATGGATTCTCTTCCATCAGTCCTGAGGCGTTACGTTCGGGAGGACAACCGCTGGTTCCAGCAGGAGCTGAGGGAATGGGAGGAGCAGTTTTGTCAGGCCCAACGGGACGAAACACCAGTGCAAACAAACACATCCACCAGCACAGAGCAACCCGTCCCGGAAGAGCCACAAAACCCAGAGCCAGAACCAACTCAAGAACAAACCAATGAAGACACTGAAGAACCACCATCAGATTCGACACCAGCACCTGTCCAAGAATCGGAAGagCCCACAGTCAGTCCTCTCAACCCGATATCACCAGAGGCCAGTGAGAATGAGGAGCAGATCAACGGGAGCCAAACTCAGGATCAGCCAGAAGAAGAGAAGCCAGATCAGAGTCAGTCGGTCTCTGCAGGTGAACTTGAGACAGAAACTGAGGTGGAGGAGCAGGTCACCAATCCTGAAGGAGGAGCAGAGGCAGAAGTAGATGCACAGACTGATCCGGAAGCCTCATCCACTGAAGAAAGCACAGCTGAAGACACAAACACCCAGCCTGAGAATGAGGTTTCTGAAGTCGAGATTCCCAATGTAGGCAAGATTCTGGTGCGCTCTGATGTTGACGGCTACAATGAGGAGATGATGTTAACACCAGCCATGCAGGGGGTGATTTTTGCCATTGCCAAGGCAAGAGAAGCCTTTGATAAAGACGGACCTGAAGCAGGACTCATCAAGGCGTTTCATGAGGAGTATTTGAGACTGTATGAACTGTCCCAGGAAGAGACCACACCGCAGCAGGACCCCCGGCTCCAGCATGTGCTGGTCTACCTTTTTCAAAACAAGGCCCCTGAGCGAGTCATTGAAAGGACGTTGCTGGAGCAGTTTGGTGATCGTAACCTGAGCTTCGATGATCGGGCCGTCAGCATCATGAGAGAGGCCAGATCGAAACTTCGACTAATTAGACCAGAAGATATGGACATGGATGAGTATTTGCAATGGCATGATGACTACAGCATGTTCAAGACAGTGTTCGCCTACCTGTTGACAGGTCTCGAGCAATATCAGAATGGAAAGATAAGAGAAGCTCTTATTTATCTGGCACACGCACACCAGGACAACTCAGCCCTGCTCACAAAAGGAGAGAGGAAAGGAGTGGACCAGTCACTTATTGCACTTTACAGGAGAAAGTGTCTGAAAGAGCTGAATGAGAAGGCAGCCACGCTGTTTAAAAGTCAGGATGAGAGTGACGTGACGGAGGGAGAGAGCctcatgaatgagtgtgtgatcCCTTGCATGCACCTCATGGTTCGAGACAGTGTCAGCCAAGAGGACCTGGATGTCATCGAGCTGATCAGGAATTGCTGGTGCTCCTACCTGGGGCAGGACATGGATGATTCTCTTCAAGAAAAGCTCAGTGAGTTCCTGCCCAGAGTTCTAGACTGCTCTGCAGAACGAGTGGTGCTGAAGGAACCCCCTAAAGTGAGGAAGTCCCCTCACGATCTGTGCAGTCGCCTGGCAGCCGTCATGGAGTCCATTCACAGCGCCTCTGTCGTCATCGTAAAGTgaagctttaaaaaaacaacaccacGCTACAGTCACAAGGTGATCTAAACCAAAGCCTCGGCCTGAGCTGGATTTCATTCTGCTGCACAATGATGCTTTCAAGCACGCtacggcacacacacacacacacacacacacacactgtgcttTCAATTCCTTGAAGAGAAATTGATTAGCTGCTCTAGACGTTTGATCTCAGGAAAGATCAAATAGATGATGTTTTAAAAGAGGGCAGTGAAGGCAGAGATTTTACCCTCATCTTCTTTTCACGTCAGCTGTAGACACATAGCGTGAAAATAGTCTTTTATCGAGATTTGCAGAAGCCACTTTATTTCAGTCTACACTTAGCTGAAGATCCTCTATGTATTCTATCTTTGTACAGTAAGCTTGTCTGATTTTCCACTCCTTTGTTCGACCCCTTTACCTTTCAGTGTTCTATCTTTCAATAAAATTTTGATTTCTCACTTTGTTGCCCTGTCCTGAGTTTTTCCTTTTCGCATTTGTTTTTCCCCCCTAATCATCTcttcttattttttgtttcttcttaTTTCTTCCCATCATAATTGTGGCCCTGAATAAAAAAGTCTCATGttgcaatagccaaaaatacaataaatgtttcTCTTAggacaaaaacacaaatacaatacTACATTACTCACTTactctcactcactttcctttggggaaaggggttgccacagtagaatgtaccaccaattactctggcatatgttttatgcaacagatccccctccagtcgcaacccagtactgataGCCGGTGAGTAAATCATAATACTCTATTAATAGTAATGACTGTAAATTCATAATTCTCTATGAGCAGTCCTTTTAAACAtgttaactgcctgctctaccaaatggttgaccatattttgactgttttaaataatgatttacacacagcattgttggtttacaaaaaaatcaagcaaacctaattctgttgcactactacacttgattttggttttattgtaaaaaacaaaacaaaaaaaacaagaaaatgtgtttaatgagaatcagaaatattttatgacataatttt

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041008-142 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis. Predicted to be active in cytosol and nucleus. Orthologous to human USP28 (ubiquitin specific peptidase 28).

Ensembl:

ensembl_id ENSDART00000184925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038567 lncRNA downstream 225576 22821680 ~ 22824734 (-) False XLOC_019587
TCONS_00038557 lncRNA downstream 341059 22706375 ~ 22709251 (-) True XLOC_019580
TCONS_00039244 lncRNA downstream 601789 22446963 ~ 22448521 (-) False XLOC_019568
TCONS_00038536 lncRNA downstream 651297 22385127 ~ 22399013 (-) True XLOC_019566
TCONS_00039636 lncRNA downstream 675302 22371319 ~ 22375008 (-) True XLOC_019564
TCONS_00039637 lncRNA upstream 4414 23115344 ~ 23132318 (-) True XLOC_019596
TCONS_00039638 lncRNA upstream 35361 23146291 ~ 23152236 (-) False XLOC_019597
TCONS_00039639 lncRNA upstream 40146 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00038598 lncRNA upstream 734607 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA upstream 789993 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00038580 mRNA downstream 3704 23036314 ~ 23046606 (-) False XLOC_019594
TCONS_00038579 mRNA downstream 15190 23019372 ~ 23035120 (-) True XLOC_019593
TCONS_00038578 mRNA downstream 32832 22960735 ~ 23017478 (-) True XLOC_019592
TCONS_00038577 mRNA downstream 98706 22922366 ~ 22951604 (-) True XLOC_019591
TCONS_00038576 mRNA downstream 122096 22922322 ~ 22928214 (-) False XLOC_019591
TCONS_00038586 mRNA upstream 48455 23159385 ~ 23308286 (-) False XLOC_019598
TCONS_00038587 mRNA upstream 48455 23159385 ~ 23331619 (-) False XLOC_019598
TCONS_00038588 mRNA upstream 53186 23164116 ~ 23305561 (-) False XLOC_019598
TCONS_00038589 mRNA upstream 193333 23304263 ~ 23307653 (-) False XLOC_019598
TCONS_00038590 mRNA upstream 193333 23304263 ~ 23307796 (-) True XLOC_019598
TCONS_00038581 other downstream 9103 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 679174 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038533 other downstream 688095 22362097 ~ 22362215 (-) False XLOC_019564
TCONS_00038532 other downstream 690974 22356807 ~ 22359336 (-) True XLOC_019563
TCONS_00038531 other downstream 692429 22354223 ~ 22357881 (-) False XLOC_019563
TCONS_00038594 other upstream 256289 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038595 other upstream 298157 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038597 other upstream 441093 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038618 other upstream 2341660 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 2494603 25605533 ~ 25613197 (-) False XLOC_019617

Expression Profile

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