RNA id: TCONS_00038599



Basic Information


Item Value
RNA id TCONS_00038599
length 1169
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_019600
representative False

Chromosome Information


Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 23845537 ~ 23910203 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACAGTaaaattgtaacttttttttttttcttggctcCCTGACTGAGCTTTATTTCTCCCTAGGTTTTCTGTCACCTGATAGAGTTTGGCTTCATTACCACTGATGCTTTCTATCTTGCTCAGCTTGGGTCTGAAAGTCttgcttttcagaaatgctagtgGTCAAATCATGTCACTAAGATTTATTGAAAAGGCAGCCTCTCATCCCCGCATAGGGAGCATACATCCACAAACTCTGATACGGCTTGAAATAATCATCGCCAAAGAGAGTGGGACTGAAGAAAAtgaattttctttttacaataaaacagaaTTTGAAGAGCCACACTCGAGTGAGGCATTTTAATACAGTATGGCTCATTAAACTCTGCTGACTTGGCCTGGGTGGCAGATGAACATTAGCTTCACAACTCATAATGTGGAACTGCAGTCTTGAGGCAATTTGGGTGCTCTGCAGACCCCATGAAGCTTTGAAACTAGTTTTTATTCTAGGCAGAACTGTCAATCAGGATGCGAGCTGAAAAGAGTGAACCTTCTGACTGTAATTTACGTGCCACACTTCACTACGCCAGATGAAAATCCCATTTATGATTAATCCGTACAGTGGAGACAGATACTGCGTGTTCTGTCTGAGGATCTCTGAATGGAACCGTAAATATCACCGTCGTGTGTCAGCTCTTTTGTCTGTCATATTTATGTAGATGAAAAAGGTAGAAGTGAGGGTTTGGGGAAAGGAAAAAGCTTTTGAATATGATTTGTTTACCCTTTTTTACTGCAGAGCATTCCACTAGTTGTGGTTGTGCacttgctttttaaataaattccaaTGTATTGATTACATAGCATGATCATCAACctgattatttaaaatacttgAATGTTTGATTCTCTTTCTTTTCTGCCTTTTTATTCTGAAGAAAGAATGAAAAACATGATTTTCATTGTAATTCACATAGTAAAATATCATGGATGTGTACGAGTGGAGCTTTGCTGTGTGCTCTGGAATGATAAAAGAAGGGATGACAGTAAATGTTTACTCTGAGTTTTCTTTGAAAATCGTGCAAAggtctgtgtaaacagccagcatactcgacCGCCTCAGTAACGAACTCGGCTAACATCTAAACAAGCCAAattttcttaaagagacagcaacagcACCACCTGAAT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194470

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00039639 lncRNA downstream 746401 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00039638 lncRNA downstream 748687 23146291 ~ 23152236 (-) False XLOC_019597
TCONS_00039637 lncRNA downstream 768605 23115344 ~ 23132318 (-) True XLOC_019596
TCONS_00038567 lncRNA downstream 1076189 22821680 ~ 22824734 (-) False XLOC_019587
TCONS_00038557 lncRNA downstream 1191672 22706375 ~ 22709251 (-) True XLOC_019580
TCONS_00039641 lncRNA upstream 770507 24679050 ~ 24686215 (-) True XLOC_019603
TCONS_00038606 lncRNA upstream 1298001 25206544 ~ 25209280 (-) True XLOC_019605
TCONS_00039642 lncRNA upstream 1307847 25216390 ~ 25222520 (-) False XLOC_019606
TCONS_00039643 lncRNA upstream 1310354 25218897 ~ 25222490 (-) False XLOC_019606
TCONS_00039644 lncRNA upstream 1310354 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00038591 mRNA downstream 154007 23338059 ~ 23746916 (-) False XLOC_019599
TCONS_00038596 mRNA downstream 397891 23466999 ~ 23503032 (-) False XLOC_019599
TCONS_00038593 mRNA downstream 425562 23338337 ~ 23475361 (-) False XLOC_019599
TCONS_00038592 mRNA downstream 425562 23338337 ~ 23475361 (-) False XLOC_019599
TCONS_00038587 mRNA downstream 569304 23159385 ~ 23331619 (-) False XLOC_019598
TCONS_00038600 mRNA upstream 623136 24531679 ~ 24535510 (-) True XLOC_019601
TCONS_00038602 mRNA upstream 631353 24539896 ~ 24632778 (-) False XLOC_019602
TCONS_00038601 mRNA upstream 631353 24539896 ~ 24632778 (-) True XLOC_019602
TCONS_00038603 mRNA upstream 794645 24703188 ~ 24865217 (-) False XLOC_019604
TCONS_00038604 mRNA upstream 794645 24703188 ~ 24865454 (-) True XLOC_019604
TCONS_00038597 other downstream 153976 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038595 other downstream 484908 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038594 other downstream 521672 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038581 other downstream 859716 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 1529787 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038618 other upstream 1544047 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 1696990 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038634 other upstream 1711862 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038640 other upstream 1794535 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038657 other upstream 2244299 26152842 ~ 26170837 (-) True XLOC_019632

Expression Profile


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