RNA id: TCONS_00038604


Basic Information

Item Value
RNA id TCONS_00038604
length 4215
RNA type mRNA
GC content 0.55
exon number 18
gene id XLOC_019604
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24703188 ~ 24865454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCGTCTGGCTGCCGTGCGCTGGTGCAGGTGCTCTATTTCATCGAGAGAGGATGCGAAAGGAAAGAAGGGGAGGGAAAGAATGAAGGGAACCGTCGGAGAAAAGTATGCAGGGCATGAGTAAAAGGGTCTCAGCAGCTGACAGCGCGTCTAACGACCAGGGGCTCGGCTAAGAATGATTTATTGAAAGGGGCACTTTGAGATATGATGAGGTTTCTCTCTGGTTGGCAATAGTACTATGATTTGGTATGTGGCCACTTTGATAGCAAGTGTATTCAGCACCAGAGGAACAGCTGCTCAAGGTGCCCACGGAGTCAGAGAGGAGCCCCAGTTTGTGACGTCCCGCGCTGGGGAGACTGTGATTCTGGGATGTGACGTAGTTCACCCACTCAACGGCCAGCCCTACGTGGTGGAGTGGTTCAAGTTTGGAGTTCCCATCCCCTTCTTCATCAACTTCCGCTTCTACCCTCCCCATGTGGACCCCGAGTACGCCGGCCGAGCCAGCCTGCATGGCAAGTCATCTCTACGTATTGAGAGGGTTCGATCAGAAGACCAGGGCTGGTACGAGTGCAAGGTCCTGATGCTGGAACAACAGTACCACACCTTCCACAACGGCAGCTGGGTGCACCTCACTGTCAATGCTCCTCCGACGTTCACGGATACGCCGCCGCAGTATGTAGAGGCCAAAGAGGGTGGCAGCATCACTCTAAGCTGCACAGCGTTCGGCAATCCCAAACCTTCAGTCAGCTGGCTGAGAGAGGGCAACCCCGTACAGGACAGCACCAAGTACAAGGTGAGTGATGGCAGTCTGACACTGGTTTCCATCAGCCGTGAGGATAGGGGTGCGTACACATGCCGGGCATACAGCGAACAAGGAGAGGCAGTTCACACCACACGCCTGCTCGTCCAAGGACCCCCATTTATTGTCTCACCGCCAGAGAACATAACCGTAAACATTTCCCAGGATGCATTCTTCACTTGTCAGGCCGAGGCTTACCCTGGCAACCTAACATACACCTGGTTCTGGGAGGAAGATAACGTCTTCTTCAAGAATGATCTGAAGCGCAGAGTGAGTATTCTGATCGATGGTTCACTCATCATCTCCCAGGTGAAACCAGAGGATGCTGGGAAATACACCTGCAGTCCGAGTAACAGCCTCGGCCGCCCACCTTCAGCATCAGCGTACCTGACAGTGCATTACCCTGCCCGTGTGATAAACATGCCGCCCGTTATTTACGTGGCCATTGGACTGCCGGGGTACATCCGCTGCCCGGTGGATGCCAACCCGCCTGTCACTTCAGTGAAGTGGAAAAAAGACGGCCTGCCTCTGCGGATAGAGAAGTACCCTGGTTGGAGCCAAATGGAAGATGGGAGCATTCGAGTGTCTGAGGTGACAGAGGACTCTCTCGGCACCTACACCTGCGTGCCTTACAATAGCCTCGGTACCATGGGACCGTCCCCTCCCGCCCCCCTGGTGCTAAAGGATCCACCCAAATTTTTGGTGGTTCCTGGAGGGGAGTACAGGCAGGAGGCTGGTCGAGAGCTGGTCATCCCCTGCGAGGCAGAAGGAGACCCATTCCCCAACATTACATGGAGAAAGGTAGGGAAGCCCAGCAGAAGCAAGCACAACGTCCTACCGAGAGGCAGCTTACAGTTCAAATCTCTCAGCAAGGAGGACCACGGGGAGTGGGAGTGTGTCGCCTCCAATGTCGCCACGAGCATCACTGCCAGCACGCACCTCCTAGTAATCGGCACAAGCCCACACGCCCCCGCCAAAGTCCACGTTACGGTCTCGACGACCTCGGCCAATGTCTCGTGGGATTCCAGTTACGATGGCGGCTTTGAGCAGACATTCTCAGTCTGGTACGGCCATGTGGTGAAGAGGGAGCAGTTGGGACCGCATGACTGGCTGTCCATGCCTGTGCCCAGCGGACAGCACTGGCTCCTGGTGCAAGGTCTGGAGCCCGAGACGGCCTACCAATTCAGCGTCCTGGCCCAGAACAAGCTGGGAACGGGCCCGTTCAGCGAGGTCGTCACTGTGAACACACTAGTATTTCCTATAAGTACCCCAGAACCACTGGTGCTGCTTACCCCACCACGGTGCCTCACAGCCAACCGGACACAGCAGGGAGTCCTGCTCACATGGATCCCTCCAGCCAATCACACGTCGCCAATCGATCACTACATCATGGATTTCCGCCTTGGGGAGAGATGGGATGTTCTTGATGATGCAATTCCTGCTGGAGAGACTGAGATCTTGGCAAGAGACCTGATTCAGGAGGCCTGGTATGAGTTCAGAGTGATGGCGGTTATGGAGGACCTTGTCAGTGAGCCCAGTAATGTAGTGGGAGTCTCTAGCACAGACTACTTCCCACCGCCTGAGGTGCCAGACGAGGGCCTGGCGCGGCCGGTGGTGGCAGGCATTGTGGCCACCATCTGTTTCCTGGCAGCCGCCATCCTCTTCAGCACGCTAGCAGCCTGTTTCGTCAACAAACAGAGACGGCGTAAGCTCAAGAGGAGACGAGatcCCCCTCTGTCTATAACACACTGCAGAAAGAGTGTGGAGACTCCGTCATCATCTGGAAAGATTAGTCCAGAAAGCATTCGCTCAATAGGACCCCCTTCAGAGTCTTCAGAGGATGGTTTACGAGCTAAGAAGTTTCCTCAAAGTCCTGCCAAGGAGGAGCTTTCCTTATACAAGAAGACCAAGAGAGCAATAATTAGCAAGAAATACAGTGTCTCTAAGCATGAGGCGGAGGCTACCACACCAATCGAATTGATCAGTCGTGGCCCAGATGGGCGCTTTGTTATGGATCCAACTGATATGGAAACCCCAGTAAAGGCACGGCGCATTGAGGGCTTCCCCTTCGTGGAGGAGTCTGACCTGTATCCTGAATTTCGACAGTCAGATGAGGAGAATGATGATCCGGGGCCAATGCCACCTGTGATGGCTACCCTCAGACCCCATCAGATTTCCCCCATTTCATCTAGCCAAGAATCTTACTTGCAGCCCCCAGCCTACAGTCCCCGCTTCCAGAGGCCCATGGAAGGCATGACTATAATGGAGACCAGTCGGCTCCAGGCAACAGGGCAGATCCGTGGTGCTCCTCACTTCCGAGCCTTTACCCATGGCCAGTTCTACAGCTATTTGGGAAGTCCAGGAGAACCTGAGCCTCCTCCTCCCTTCTACATGCCAGACACCAGCCCTCTCAGCTCTGTAATGTCCTCTCCTCCATACCACCTAGAGGGGCCTTTTGGTCATCCCACCATACCAGAGGAAATTGGTGAGGGTGAGATTCAGCATTATGCAGTCTCTGGCTACACCCTTCCCTTGGCACACCCCTCCACCTCGCGCTCTCCAGACATCTGGCAGAGACCAGATTTCACCTTTGCTACAATAGAGGGTCCTCACTTTATTTTCCCACCACCACACCCTTTGCATCTTCATCCGGAACCTCCCCTTCCTCCCCCTCTTGTTCTTCCTCCTAGTGCCCTCCAGCCCTCCACACTTCAAGTTTCTCCTTACCCTGGTATCCTGCAGCTGGAGGCCCCAAAGAGCCGCCCAGGCAAGTCTCCCAGCAAGGTCAAGCCTCAGGGCCTTCCAGCCAAGCGTTTACCTATGCAAGAGGCACAGAGTCTAGGGCAGCTAAGACACACAAGCCACGGTATGGGTGTACCGGTATTGCCTTACCCTGACCCGGTGTCTCACATGGTTGGCCCAAGCTCGTTCGGAAGCCTGGACACAAGATGGTACGAGCTTACACCCAGGCTTAGCCCCAGGCAGCCCCGTAGGATGGAACCCAGCATGGTTGTTCTCCAGCCATCCCGCCTCTCACCTCTAACTCAGAGCCCTATTAGCTCTCACGAAGGCTCACCAGAGATTGTAGTTCGTCCCAGACCCCGTCCTAGTATGATCCAACCCCCGATTCCTCCTGAGATGTCTGAGATCACCCTTCAACCTCCTTCTTCAGCTAGCTTCTCTAGGAGGTCCTCCCCTTCCTCTTCTCCTGCTCAAGGCCAAGGCAGCCGAAGGGCAAGTCCCAGCTACCGATCCCACATGGCATTTGCCACCTCAGCGGCAAGCTATCCGTCACAGTCCCCTTCACCTCCTGTAGAAAGCAGCAACATTTTTGGGCAGATGCCAACCCAGAGGAGGACTGAGGAGGAGATCCTTCCATCAGAACCCTCTCCACCCCAGTTATCAGCTTCAGGGTAG

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091112-15 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Orthologous to human IGSF9B (immunoglobulin superfamily member 9B).

Ensembl:

ensembl_id ENSDART00000142907

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039641 lncRNA downstream 16973 24679050 ~ 24686215 (-) True XLOC_019603
TCONS_00039640 lncRNA downstream 792985 23901062 ~ 23910203 (-) True XLOC_019600
TCONS_00038598 lncRNA downstream 794645 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA downstream 794645 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00039639 lncRNA downstream 1548666 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00038606 lncRNA upstream 341090 25206544 ~ 25209280 (-) True XLOC_019605
TCONS_00039642 lncRNA upstream 350936 25216390 ~ 25222520 (-) False XLOC_019606
TCONS_00039643 lncRNA upstream 353443 25218897 ~ 25222490 (-) False XLOC_019606
TCONS_00039644 lncRNA upstream 353443 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00039645 lncRNA upstream 356497 25221951 ~ 25226888 (-) True XLOC_019606
TCONS_00038602 mRNA downstream 70410 24539896 ~ 24632778 (-) False XLOC_019602
TCONS_00038601 mRNA downstream 70410 24539896 ~ 24632778 (-) True XLOC_019602
TCONS_00038600 mRNA downstream 167678 24531679 ~ 24535510 (-) True XLOC_019601
TCONS_00038596 mRNA downstream 1200156 23466999 ~ 23503032 (-) False XLOC_019599
TCONS_00038592 mRNA downstream 1227827 23338337 ~ 23475361 (-) False XLOC_019599
TCONS_00038605 mRNA upstream 340835 25206289 ~ 25213616 (-) False XLOC_019605
TCONS_00038607 mRNA upstream 381479 25246933 ~ 25250594 (-) False XLOC_019607
TCONS_00038608 mRNA upstream 381529 25246983 ~ 25272317 (-) False XLOC_019607
TCONS_00038609 mRNA upstream 399779 25265233 ~ 25272416 (-) True XLOC_019607
TCONS_00038610 mRNA upstream 410239 25275693 ~ 25295087 (-) False XLOC_019608
TCONS_00038597 other downstream 956241 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038595 other downstream 1287173 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038594 other downstream 1323937 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038581 other downstream 1661981 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 2332052 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038618 other upstream 587136 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 740079 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038634 other upstream 754951 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038640 other upstream 837624 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038657 other upstream 1287388 26152842 ~ 26170837 (-) True XLOC_019632

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_04786488_04866122.mRNA True 4918 mRNA 0.54 22 CI01000006 4786425 ~ 4866504 (+)
bowfin (Amia calva) AMCG00004395 True 2019 mRNA 0.64 4 CM030121.1 46688600 ~ 46702427 (+)