XLOC_019632 (gria1b)


Basic Information

Item Value
gene id XLOC_019632
gene name gria1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26152332 ~ 26250744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038655
ATGTGGCAAAGCTTCGTCCTACTGTTAACCGGTTTGCTTGGGTTGTGCTCATGTTCAAGTTTCCCAAGTAACATCAACATAGGAGGTTTGTTTCCAACCGACTCCCATGAATACGATGTGTTCCGTTTCGCGCTCTCGCAGCACAATGATGTCCCTAAACTGGTACCACAAGTGGACATGGTGGACACGGGGAGCAGCTTTGCTATGACATACGCCTTTTGTTCACAGTTCTCCAAAGGAGTCTACGCCATCATCGGTCTGTATGACAGGAAGACCATGAACATGCTGATGTCGTTCTGTGGCGCTTTGCACGTATGTTTCGTCACGCCGAGCTTCCCCATCGACACCAACAACCAGTTTGTGATCCAGCTGAGACCTGAGCTCCAGGATGCTCTGATCGCCCTCGTCGAGCACTACAAGTGGAATAAGTTCGTCTACATGTACAGCTCAGACTCAGgtCTGACAGTGTTGCAGAAGATCTTAGACACTGCAGCTGAGAAGACCTGGCAGGTGACGTCCATAAACTTTGACACACTGACAGAAGCGGCATTCCTGAAAGCCATCCAAGATCTGGATAATAAGAAGGAGTTCAAGATCATTCTGGACTGTGAGCTGGAGAGACTCAACTCCATCTTAAACCTgATCGCAGCGCAGAAAAAAAACTTGAAGAACTACCATTACATACTAGCAAACCTGGGATTTCTGGATCTTAATCTCACTGAGTTCAGGAAGGGAGGTGCAAATGTGACAGGCTTCCAGCTGATGAACTACACAAACCCTACTGTCAGCAGGACAATACAGGACTGGCTGGAGTTTGACAGTAAAGACTTGAAAAGCCCCAAAAGGAGACTCAAGTACACTGGAGCACTCACATATGACGGGGTGACTGTCATGGCCACTGCCTTCCAGAATCTGAGAAAGCAGCGCATTGATATCTCACGCAGGGGGAATGCAGGAGAGTGTCTGGCGAACCCTCCAGCACCCTGGGGTCAGGGCATCGACATCCAGAGAGCCTTACAGCAGGTGCAGTTTGAAGGACTTACAGGACATGTTCAGTTTAATGACAAAGGACATCGAACCAATTTCACTGTCAGTGTGATGGAGTTTGGCCCAAGCGGACCCAAAAAAGTGGGCTACTGGAATCAACGTGAGAAATATGTGAGCACAGCTACTTACAGCAACATGCTCAACGAGACGTTCGGACTGCAAAACAGGACCTACGTCGTCACTACCATCCTGGAAGCTCCATATGTGATGCTGAAGAAGAACCACGAGCAGCTAGTAGGGAATGATAAATATGAGGGTTATTGTGTGGAGCTTGCGGCAGAAATCGCCAAACACGTGGGCTATTCCTACAGACTAGAGCTCGTGGGAGATGGAAAGTATGGAGCCAGAGATGCAGAGACAATGATGTGGAATGGGATGGTTGGAGAACTAGTGTATGGCAAAGCAGATGTTGCTGTGGCCCCCCTCACCATCACACTGGTCAGAGAAGAGGTCATTGACTTCTCCAAGCCCTTCATGAGCTTAGGAATCTCCATCATGATCAAGAAACCCACCAAATCCAAACCAGGCGTCTTCTCGTTCCTGGACCCGCTGGCCTATGAGATCTGGATGTGCATTGTGTTTGCTTATATTGGTGTGAGTGTGGTGCTGTTCCTGGTCAGCCGCTTCAGTCCATACGAGTGGCATGCAGATGATGAAGAGGAAACAGCAGATCAGCAAAACCAGAACCAACCACCGTCGCCAGAACCAAACCAGTCGCCAAACCAGAGTCAGAACCAGCGAGAGGAGAAGCAGGAGAAACAACCGGAGCACACCAATGAGTTTGGGATCTTCAACAGCCTGTGGTTTTCCCTCGGAGCCTTTATGCAGCAAGGATGCGATATCTCACCAAGATCTCTCTCTGGTCGTATAGTCGGAGGTGTGTGGTGGTTCTTCACTCTGATTATCATCTCCTCCTACACAGCCAACCTGGCTGCCTTCCTCACTGTGGAAAGGATGGTTTCACCCATTGAGAGTGCAGAGGATTTGGCTAAGCAAACTGAGATTGCTTATGGGACTCTGGATGGAGGATCCACTAAAGAGTTCTTCAGGAGATCAAAAATCGCAGTATTTGAGAAGATGTGGTCCTACATGAAGTCTGCAGAGCCTACAGTGTTTGTGAAGACAACAGACGAAGGCGTCGTTCGAGTAAGAAAGTCCAAAGGGAAGTATGCTTATCTGCTGGAGTCCACAATGAATGAATATATCGAGCAGCGCAAACCTTGTGACACCATGAAGGTGGGAGGAAACTTGGACTCAAAGGGTTATGGAGTGGCCACACCTAAAGGATCTGCTTTGAGAATCCCCGTAAACCTAGCGGTGTTGAAGCTCAATGAGCAAGCCGTCTTAGACAAACTGAAAAACAAATGGTGGTACGATAAAGGGGAGTGTGGAAGCAAGGACTCCGCCAGAAAGGATAAGACCAGTGCTCTGAGCCTCAGTAATGTGGCTGGAGTtttctacattctgattggtGGACTTGGGCTGGCCATGCTGGTGGCCCTGGTCGAGTTCTGTTACAAATCAAGAATCGAGTCTCGAAGGATGAAGCAAATCATTGATGCTGCAATGCTCAGCTCCACACTGACTAGGATGGGTAGTGGAGGTGAGAATGGTCGTGTGATGGCCCATGACTTCCCCAAAGGGGCACAGACTCTGCCATGTATGGGCCAGGCGGCCGCCATGGGCCTCAGCACCACTGGGATGTAAACAGCCATCATCCTCCCCGAAATGACGGGACATCAGGAGACTAGTGGAAAGAGTGGAAGATGATGTGAGAGACACTGCAGTGTACATCTCACCTGCCACTGAAGTACTGCCAAATGGATTCATGGACACATTCTGGGCTCCAAATGAAATTAGATAAAGATGGAggaaaattacttttttaatatcAGGATGTggctgtttctttcttttttttctttttttttttttttgaatatcttTTGCAATAAGGAGACCATGTGTGAGGTGTTTTTGTATGAAGTTTCACTTTTGACAAAACTGGGTTTTCCTTCAATTCTACACAAAAATTACTGACaatgttttttgtcatttcattgtCCACAAATCCCTCCGAATTTCCTGATTATGATCATTTTATTCTCTTCATCTGCCTTCTGATATATCCAACAAACATCTGAAggacattttatttgacatatttttccATAGTTTCAAATCATTTTTACACTATCAGATAGTGAAGGTGAAGTATGTAATTTCTGTGTTACTGGCATACCCATGGCGAATTGCAAAAGTGTGTTCATCATTGATTGGAAAAACCAATATTCCTCTCCTTAAATCACAAGTTGGCTGGGTTAGGAAGTACATCATCTAATACTTACTACAGTATATAATGTGAAAAAGGGGACAGTTGAAAATCAAATGATTGAAATGCAGAGCACTTTCAAAAGATTTATGCTCACCAGGCACAGCTATACAATCCGAATAAATGTCAACTAACA
>TCONS_00038656
TAACGGCAACCGGGAGCGCGCGCAGTGATGGTGTTGAGAAAGCGATCAAGATCCGCGTTGACTTTCTCCTGCTGACATTACAGAGAGTGTGTTCATTTGTTAGTAGGTCTGTCCGAGACACGTTTTTTCAGTCAGCACTGCAGTTTTACAGTACCAACAGGACTTACCAACAGGGATTCACTGCGCTCTGCTGGCTCTGCGTTACAGCCATGGGTTCAGTGTGAGTGAAGAGACAAAAGACTTTTGGATATATATCATATATGTTTGGCTTTTGGTGTGTTTCTCAAATGCAAACGGAAATATGTGGCAAAGCTTCGTCCTACTGTTAACCGGTTTGCTTGGGTTGTGCTCATGTTCAAGTTTCCCAAGTAACATCAACATAGGAGGTTTGTTTCCAACCGACTCCCATGAATACGATGTGTTCCGTTTCGCGCTCTCGCAGCACAATGATGTCCCTAAACTGGTACCACAAGTGGACATGGTGGACACGGGGAGCAGCTTTGCTATGACATACGCCTTTTGTTCACAGTTCTCCAAAGGAGTCTACGCCATCATCGGTCTGTATGACAGGAAGACCATGAACATGCTGATGTCGTTCTGTGGCGCTTTGCACGTATGTTTCGTCACGCCGAGCTTCCCCATCGACACCAACAACCAGTTTGTGATCCAGCTGAGACCTGAGCTCCAGGATGCTCTGATCGCCCTCGTCGAGCACTACAAGTGGAATAAGTTCGTCTACATGTACAGCTCAGACTCAGgtCTGACAGTGTTGCAGAAGATCTTAGACACTGCAGCTGAGAAGACCTGGCAGGTGACGTCCATAAACTTTGACACACTGACAGAAGCGGCATTCCTGAAAGCCATCCAAGATCTGGATAATAAGAAGGAGTTCAAGATCATTCTGGACTGTGAGCTGGAGAGACTCAACTCCATCTTAAACCTgATCGCAGCGCAGAAAAAAAACTTGAAGAACTACCATTACATACTAGCAAACCTGGGATTTCTGGATCTTAATCTCACTGAGTTCAGGAAGGGAGGTGCAAATGTGACAGGCTTCCAGCTGATGAACTACACAAACCCTACTGTCAGCAGGACAATACAGGACTGGCTGGAGTTTGACAGTAAAGACTTGAAAAGCCCCAAAAGGAGACTCAAGTACACTGGAGCACTCACATATGACGGGGTGACTGTCATGGCCACTGCCTTCCAGAATCTGAGAAAGCAGCGCATTGATATCTCACGCAGGGGGAATGCAGGAGAGTGTCTGGCGAACCCTCCAGCACCCTGGGGTCAGGGCATCGACATCCAGAGAGCCTTACAGCAGGTGCAGTTTGAAGGACTTACAGGACATGTTCAGTTTAATGACAAAGGACATCGAACCAATTTCACTGTCAGTGTGATGGAGTTTGGCCCAAGCGGACCCAAAAAAGTGGGCTACTGGAATCAACGTGAGAAATATGTGAGCACAGCTACTTACAGCAACATGCTCAACGAGACGTTCGGACTGCAAAACAGGACCTACGTCGTCACTACCATCCTGGAAGCTCCATATGTGATGCTGAAGAAGAACCACGAGCAGCTAGTAGGGAATGATAAATATGAGGGTTATTGTGTGGAGCTTGCGGCAGAAATCGCCAAACACGTGGGCTATTCCTACAGACTAGAGCTCGTGGGAGATGGAAAGTATGGAGCCAGAGATGCAGAGACAATGATGTGGAATGGGATGGTTGGAGAACTAGTGTATGGCAAAGCAGATGTTGCTGTGGCCCCCCTCACCATCACACTGGTCAGAGAAGAGGTCATTGACTTCTCCAAGCCCTTCATGAGCTTAGGAATCTCCATCATGATCAAGAAACCCACCAAATCCAAACCAGGCGTCTTCTCGTTCCTGGACCCGCTGGCCTATGAGATCTGGATGTGCATTGTGTTTGCTTATATTGGTGTGAGTGTGGTGCTGTTCCTGGTCAGCCGCTTCAGTCCATACGAGTGGCATGCAGATGATGAAGAGGAAACAGCAGATCAGCAAAACCAGAACCAACCACCGTCGCCAGAACCAAACCAGTCGCCAAACCAGAGTCAGAACCAGCGAGAGGAGAAGCAGGAGAAACAACCGGAGCACACCAATGAGTTTGGGATCTTCAACAGCCTGTGGTTTTCCCTCGGAGCCTTTATGCAGCAAGGATGCGATATCTCACCAAGATCTCTCTCTGGTCGTATAGTCGGAGGTGTGTGGTGGTTCTTCACTCTGATTATCATCTCCTCCTACACAGCCAACCTGGCTGCCTTCCTCACTGTGGAAAGGATGGTTTCACCCATTGAGAGTGCAGAGGATTTGGCTAAGCAAACTGAGATTGCTTATGGGACTCTGGATGGAGGATCCACTAAAGAGTTCTTCAGGAGATCAAAAATCGCAGTATTTGAGAAGATGTGGTCCTACATGAAGTCTGCAGAGCCTACAGTGTTTGTGAAGACAACAGACGAAGGCGTCGTTCGAGTAAGAAAGTCCAAAGGGAAGTATGCTTATCTGCTGGAGTCCACAATGAATGAATATATCGAGCAGCGCAAACCTTGTGACACCATGAAGGTGGGAGGAAACTTGGACTCAAAGGGTTATGGAGTGGCCACACCTAAAGGATCTGCTTTGAGAAACCCAGTAAACCTGGCAGTGTTAAAACTGAACGAGCAGGGCCTGTTGGacaaattgaaaaacaaatgGTGGTACGACAAGGGAGAGTGTGGCAGCGGAGGAGGTGATTCCAAGGATAAGACCAGTGCTCTGAGCCTCAGTAATGTGGCTGGAGTtttctacattctgattggtGGACTTGGGCTGGCCATGCTGGTGGCCCTGGTCGAGTTCTGTTACAAATCAAGAATCGAGTCTCGAAGGATGAAGCAAATCATTGATGCTGCAATGCTCAGCTCCACACTGACTAGGATGGGTAGTGGAGGTGAGAATGGTCGTGTGATGGCCCATGACTTCCCCAAAGGGGCACAGACTCTGCCATGTATGGGCCAGGCGGCCGCCATGGGCCTCAGCACCACTGGGATGTAAACAGCCATCATCCTCCCCGAAATGACGGGACATCAGGAGACTAGTGGAAAGAGTGGAAGATGATGTGAGAGACACTGCAGTGTACATCTCACCTGCCACTGAAGTACTGCCAAATGGATTCATGGACACATTCTGGGCTCCAAATGAAATTAGATAAAGATGGAggaaaattacttttttaatatcAGGATGTggctgtttctttcttttttttctttttttttttttttgaatatcttTTGCAATAAGGAGACCATGTGTGAGGTGTTTTTGTATGAAGTTTCACTTTTGACAAAACTGGGTTTTCCTTCAATTCTACACAAAAATTACTGACaatgttttttgtcatttcattgtCCACAAATCCCTCCGAATTTCCTGATTATGATCATTTTATTCTCTTCATCTGCCTTCTGATATATCCAACAAACATCTGAAggacattttatttgacatatttttccATAGTTTCAAATCATTTTTACACTATCAGATAGTGAAGGTGAAGTATGTAATTTCTGTGTTACTGGCATACCCATGGCGAATTGCAAAAGTGTGTTCATCATTGATTGGAAAAACCAATATTCCTCTCCTTAAATCACAAGTTGGCTGGGTTAGGAAGTACATCATCTAATACTTACTACAGTATATAATGTGAAAAAGGGGACAGTTGAAAATCAAATGATTGAAATGCAGAGCACTTTCAAAAGATTTATGCTCACCAGGCACAGCTATACAATCCGAATAAATGTCAACTAACA
>TCONS_00038657
ATCTCTCTCTGGTCGTATAGTCGGAGGTGTGTGGTGGTTCTTCACTCTGATTATCATCTCCTCCTACACAGCCAACCTGGCTGCCTTCCTCACTGTGGAAAGGATGGTTTCACCCATTGAGAGTGCAGAGGATTTGGCTAAGCAAACTGAGATTGCTTATGGGACTCTGGATGGAGGATCCACTAAAGAGTTCTTCAGGAGATCAAAAATCGCAGTATTTGAGAAGATGTGGTCCTACATGAAGTCTGCAGAGCCTACAGTGTTTGTGAAGACAACAGACGAAGGCGTCGTTCGAGTAAGAAAGTCCAAAGGGAAGTATGCTTATCTGCTGGAGTCCACAATGAATGAATATATCGAGCAGCGCAAACCTTGTGACACCATGAAGGTGGGAGGAAACTTGGACTCAAAGGGTTATGGAGTGGCCACACCTAAAGGATCTGCTTTGAGGATAAGACCAGTGCTCTGAGCCTCAGTAATGTGGCTGGAGTtttctacattctgattggtGGACTTGGGCTGGCCATGCTGGTGGCCCTGGTCGAGTTCTGTTACAAATCAAGAATCGAGTCTCGAAGGATGAAGCAAATCATTGATGCTGCAATGCTCAGCTCCACACTGACTAGGATGGGTAGTGGAGGTGAGAATGGTCGTGTGATGGCCCATGACTTCCCCAAAGGGGCACAGACTCTGCCATGTATGGGCCAGGCGGCCGCCATGGGCCTCAGCACCACTGGGATGTAAACAGCCATCATCCTCCCCGAAATGACGGGACATCAGGAGACTAGTGGAAAGAGTGGAAGATGATGTGAGAGACACTGCAGTGTACATCTCACCTGCCACTGAAGTACTGCCAAATGGATTCATGGACACATTCTGGGCTCCAAATGAAATTAGATAAAGATGGAggaaaattacttttttaatatcAGGATGTggctgtttctttcttttttttctttttttttttttttgaatatcttTTGCAATAAGGA

Function

symbol description
gria1b Predicted to enable AMPA glutamate receptor activity and neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human GRIA1 (glutamate ionotropic receptor AMPA type subunit 1).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0043197 dendritic spine cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004971 AMPA glutamate receptor activity molecular_function
GO:0099583 neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020125-2 Predicted to enable AMPA glutamate receptor activity and neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human GRIA1 (glutamate ionotropic receptor AMPA type subunit 1).

Ensembl:

ensembl_id ENSDARG00000032714

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038655 False 3515 mRNA 0.46 16 26152332 26250443
TCONS_00038656 False 3816 mRNA 0.46 16 26152332 26250744
TCONS_00038657 True 992 nonsense_mediated_decay 0.47 4 26152842 26170837

Neighbor

gene id symbol gene type direction distance location
XLOC_019631 nipal4 coding downstream 37446 26097732 ~ 26114886 (-)
XLOC_019630 tlcd1 coding downstream 62368 26080215 ~ 26089964 (-)
XLOC_019629 rab34b coding downstream 80559 26062452 ~ 26071773 (-)
XLOC_019628 sdf2 coding downstream 124127 26021496 ~ 26028205 (-)
XLOC_019627 mettl27 coding downstream 350376 25795875 ~ 25801956 (-)
XLOC_019633 NA coding upstream 632 26251376 ~ 26395308 (-)
XLOC_019634 eif4ebp3 coding upstream 150588 26401332 ~ 26406304 (-)
XLOC_019635 ankhd1 coding upstream 157272 26408016 ~ 26483237 (-)
XLOC_019636 zgc:110540 coding upstream 235105 26485849 ~ 26490186 (-)
XLOC_019637 cd248b coding upstream 242950 26493694 ~ 26495700 (-)
XLOC_019609 BX510938.1 non-coding downstream 774321 25376752 ~ 25378011 (-)
XLOC_019606 NA non-coding downstream 925444 25216390 ~ 25226888 (-)
XLOC_019603 NA non-coding downstream 1466117 24679050 ~ 24686215 (-)
XLOC_019600 CR936479.1 non-coding downstream 2242129 23845537 ~ 23910203 (-)
XLOC_019597 NA non-coding downstream 2997810 23146291 ~ 23154522 (-)
XLOC_019640 NA non-coding upstream 350217 26600961 ~ 26603641 (-)
XLOC_019643 BX465841.1 non-coding upstream 451077 26701821 ~ 26701954 (-)
XLOC_019645 NA non-coding upstream 570178 26820922 ~ 26825306 (-)
XLOC_019649 NA non-coding upstream 937380 27188124 ~ 27191434 (-)

Expression


Co-expression Network