XLOC_019636 (zgc:110540)


Basic Information

Item Value
gene id XLOC_019636
gene name zgc:110540
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26485849 ~ 26490186 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038663
CTGGCCATGTGAACACTTGCCTTTACCGCGAATTTCAAGCGGTTCTTGAAGCTGTTTAGGCGCGCACGATAACATTTGGTCcttgtagatttttttatttaaagagtttCAAGTActtgctttattatttatttgtttattttcttgatACAATAATGGCAACTCCTCCTAAGAGACTTTGTTCGAGCTTCGACGCAGACCTGAGTTTTGAAAAAAGGGCAATGAAGGTCTCGATAGAGGGAAACATTGCGGCAGGAAAGTCCACTTTCGTACGTTTGTTAGAGCGGGCATCAGAGGAATGGGAGGTCATACCAGAGCCCATAGGGAAATGGTGCAATGTACAGACCACAGAGAATGAATATGAGGAGCTCAGCACATCCCAGAAGAGCGGAGGCAACCTGCTGCAGATGTTATACGACAAGCCGAGTCGCTGGTCCTACACTTTCCAGACCTACGCCTGTCTGAGTCGAGTCCGTTCGCAGCTTCAGCCTCCATCTGCCAAACTTCAGCAGGCAGAGAAGCCAGTCCAGTTCTTTGAGCGCTCCGTCTACAGTGACCGATACGTGTTCGCCTCCAATCTCTTTGAGTCCGGAGATTTGAATGAGACCGAATGGGCCATTTACCAAGACTGGCATTCATGGCTTCTCACTCAGTTTGAGTCGCAGATTGAACTGGATGCCATGATCTATCTTCGGGCTGATCCTGAGAGGTGTATGCAGCGGCTTCAGTTTAGAGGACGAGAAGAGGAGCAGGGGATTCCTCTGGACTATTTGGAGAAGCTGCATTATAAGCACGAGTGTTGGCTGTACAACCAAACCACAAAGTTGGACTTTGAGTATCTAAAAGACCTTCCCATCCTGATCCTGGATGTTAATGAGGATTTTAAAAATgacagaattaaacaggaaggtGTAATTGATAAGgtcAAGGAGTTTCTGAACAGCCTTTAGCATTTAAATATAAGTAATTTATTGTGTGTTGATCATGAAAACTTGATGGATTCATGCATGTGGTCAACTGAGTGAATTTTGTATcattgtgttgttatttttaacTGATTGTTATGTTTAGCTTGTATATATCTATTttgtaattttacattaaaatataattttaacaaaaagcaaacaaaaaaatcaaccatgtgttattaattttgttttaagtaCTTTGTATAGGATAAGAATTACATCAAATGTAAAGTGTGGAATATTTTGTGACGAGCAACATATGCTGTTGGTGCAGAGatacttttttatacattttgtaaTGAGTTATACAGACTTAatgtacgttttagttttaatgtTGCAGGATTCCCACAGACTAACTCTGGAGATGTCAGTGGTTAAAAAAAATGATGCTTACATTACACAATTGGAAAGTTCATTTAGTTACTCTCTGCACTTAAATATTTAATCTGTTTGAAATTGCTCTGTGAGTGctgaatcatttttttatttaattatgaaccACTGCAAATGTCATGTCATTTTATTGGAGAAGAGCTGTGGGATGAATGTGTATTGAAACAATGTATAACTTGAAtagagagaaaaataaaagagGTTTCACAACCAGAAA

Function

symbol description
zgc:110540 Predicted to enable deoxynucleoside kinase activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process and phosphorylation. Predicted to be active in mitochondrion. Is expressed in proliferative region.

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0019136 deoxynucleoside kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004137 deoxycytidine kinase activity molecular_function
GO:0019206 nucleoside kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-77 Predicted to enable deoxynucleoside kinase activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process and phosphorylation. Predicted to be active in mitochondrion. Is expressed in proliferative region.

Ensembl:

ensembl_id ENSDARG00000054929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038663 True 1584 mRNA 0.39 7 26485849 26490186

Neighbor

gene id symbol gene type direction distance location
XLOC_019635 ankhd1 coding downstream 2612 26408016 ~ 26483237 (-)
XLOC_019634 eif4ebp3 coding downstream 79545 26401332 ~ 26406304 (-)
XLOC_019633 NA coding downstream 90541 26251376 ~ 26395308 (-)
XLOC_019632 gria1b coding downstream 235105 26152332 ~ 26250744 (-)
XLOC_019631 nipal4 coding downstream 370963 26097732 ~ 26114886 (-)
XLOC_019637 cd248b coding upstream 3508 26493694 ~ 26495700 (-)
XLOC_019638 rce1b coding upstream 24417 26514603 ~ 26521992 (-)
XLOC_019639 CR631122.1 coding upstream 65803 26555989 ~ 26558268 (-)
XLOC_019640 NA coding upstream 110775 26600961 ~ 26603641 (-)
XLOC_019641 nxf1 coding upstream 174828 26665014 ~ 26677834 (-)
XLOC_019609 BX510938.1 non-coding downstream 1107838 25376752 ~ 25378011 (-)
XLOC_019606 NA non-coding downstream 1258961 25216390 ~ 25226888 (-)
XLOC_019603 NA non-coding downstream 1799634 24679050 ~ 24686215 (-)
XLOC_019600 CR936479.1 non-coding downstream 2575646 23845537 ~ 23910203 (-)
XLOC_019643 BX465841.1 non-coding upstream 211635 26701821 ~ 26701954 (-)
XLOC_019645 NA non-coding upstream 330736 26820922 ~ 26825306 (-)
XLOC_019649 NA non-coding upstream 697938 27188124 ~ 27191434 (-)
XLOC_019658 CR405687.1 non-coding upstream 1068304 27558490 ~ 27566738 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_03888048_03891012 NA coding CI01000006 null 3887373 ~ 3891478 (+)
grasscarp (Ctenopharyngodon idella) G143853 NA non-coding CI01000027 null 9555699 ~ 9556051 (-)
tiger barb (Puntius tetrazona) G110638 gapdh,LOC107550818 non-coding NC_056714.1 CM032083.1 8566389 ~ 8630071 (+)
mexican tetra (Astyanax mexicanus) G121171 zgc:110540,LOC103029689,LOC108439787,LOC108278442,LOC105907442 non-coding NC_035910.1 CM008313.1 11573750 ~ 11576853 (+)