RNA id: TCONS_00038601


Basic Information

Item Value
RNA id TCONS_00038601
length 5853
RNA type mRNA
GC content 0.51
exon number 24
gene id XLOC_019602
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24539896 ~ 24632778 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGCTGGCAGTGGGGCTGCTGCAGTGGTGGGAAGTGCAGCTCTTGGACTGCTCGGAGCCACAGGAAGTCATGATATCTCCGACAGGGGCCTGAGGCCTGGACGGCACCCTGAAGAAGACGATATCGTGCCAGAGCTTGCCAGGAGCATCCACCCCCGAGAGCGACCTGACTGGGAGGAAACCATCAGCGCAATGGCACGAAGTGCTGAAATTCCAGAGCTGAGCTCTGAGCCGCTCATGCGCTCCTGCAGCAGCACCGCCAGTATGAAGGTGAAGAATGTCAAAAAGCTGTCATTCACCAAGGGCCATTTTCCAAAGTTAGCTGAATGTGCCCACTTCCACTATGAAAACGTTGATTTTGGAACAATACAGTTAACCCTCGCAGATGAGCAGACTGAAGTGACACGGAATGGCCTGGAGTCAAAAGAGCCTGTGTATTTGGTTCAGATCTACTGTCAGGGACGAAGCTGGATCGTGAGACGAAGCTATGAAGATTTCCGAGTCTTGGATAAGCATCTCCATCTCTGCATCTATGACCGCCGATTTTCCCAGCTCCCTGAGCTGCCCCGTTTCGACAGCCTGAGGGAGAGAGCGGAGGCAGTTTCCCAGATGCTGATGGCTTACCTCTCCCGTCTCTCAGCCATTGCTGATAACAAGATCAATTGTGGGCCGGCCCTCACGTGGATGGAGGTTGACAACAAAGGGAATCATTTGCTGGTGCATGAAGAATCATCTATAAATGTTCCAGCTATCGCAGCGGCCCACGTGATCAAGCGCTACATCGCACAGGCAGCTGATGAGCTGTCATTTGAGgtGGGGGATATTGTTTCTGTCATTGACATGCCACCCAAAGAGGACACCACCTGGTGGAGGGGAAAACATGGTTTCCAGGTTGGCTTCTTTCCCAGCGAGTGTGTGGAGCTGATAAACGACAAGGTCCCGCAGTCTGTCACCAACTCTGTGCCAAAACCAGCGTCCCCCTGCTCTGGTCTGCGGCCGGCATCCTGGAGTCTGTTCCCACCCTATTTGGAGATGGAGAGTATAAAGCAGGACAGTGCATTGGCACCCGACCCATTAAACCCCTACAGGCTGAGCTCAGTATCCAAGAAACACGGGAAACTGATCACTTTTCTGCGCACATTCATGAAGTCCAGGCCGACCAAGCAGAAGCTGAAGCAAAGAGGTATCCTCAGGGAGAGGGTGTTCGGCTGTGACCTAGGAGAGCATCTCCTCAACTCTGGCCATGATGTCCCCCAGGTACTCAAGAGCTGCACCGAGTTCATTGAGAAGCATGGAGTGGTTGATGGAATGTATCGTCTCTCTGGGATCGCCTCCAACATTCAGAAGCTGCGgcACGAGTTTGATTCTGAACAGATCCCAGATCTGACAAAAGATGTTTACATTCAGGATATACACTGCGTGGGCTCCCTGTGCAAGCTCTACTTTCGAGAGCTTCCCAACCCACTTCTCACCTACCAGCTGTACGAGAAATTCTCGGAGGCTGTGTCAGCAGCCACAGACGAGGAGAGGCTGATCAAAATACATGACGTCATTCAGCAGCTGCCGCCTCCGCATTATAGAACCCTTGAGTTTCTTATGAGGCATCTTTCACACTTGGCAACCTTCAGCTATGTAACGAACATGCATACTAAAAATTTGGCCATCGTTTGGGCCCCCAACTTACTGAGGTCAAAGCAAATAGAATCTGCTTGCTTCAGTGGGACAGCAGCCTTCATGGAAGTACGAATACAATCGGTTGTGGTGGAGTTCATCCTGAATCATGTGGATGTTCTCTTCAGTCCCAAACTGAGCTCTCTTATTCGAGAGGGAACAGGACACAACTCTTTGTCTCGGCCTAAGTCTTTGCTAGTACCGTCTCCATCCACAAAGCTGCTAACTCTAGAAGAGGCACAGGCACGCACACAGGCCCAGATCAACTCACCCATCACTGCAGACAGCAAGTACATAGAGGTCGGAGAGGGTCCTGCAGCATTACAAGGAAAATTCCACACAGTCATAGAATTCCCTACTGAGAGGAAGAGGCAGCCCATGAAGTCTAAGAAGTCTCCAGTTGGCAGTTGGCGTTCTTTTTTCAACCTGGGCAAGTCTTCTTCAATGTCGAAACGCAAACTACAGCGTAATCCCAGTGAACCAAATGAACTCAAGGCTATGGCACTGGCTGGAGGAAGAGGAGACACTGGTACTCTTCGGTCAGCCAAAAGTGAAGAGTCTCTCACCTCTCTACATAATGTTGAAGGAGAGTCTAAAGTGTATAGGCCCCGCAGACCTCGCTCCAGCAGTGATGCCCTCTCTGCTTCATTCAATGGTGACCTTCTGGATACCAGACAGCACTGTAACTCGTACGACAACCTAGGTCATGGAGACAGTGATGGGGATGATGGTCCAATCTGTGTGCCTGCTCTCATCTCCCCACCACGCTCCGCTGATGATGTGGATCTGAGCCCCCCTGACATTGGCATGGCCTCTTTAGACTTTGACCCCATGTCTTTCCAATGTAGCCTTCCTCTGGCAGAAACTTCGATTTTCTCAATTGACGCAGATACAAGCAGTCTAAAAAGGAGCCCTGCCAGTGGCTCAGAGTCAGTCTCGCCAGTCCGAGCTAAAGTTACGAGCCGGTTTTTGTCTCCAGACCACAGTACAGCCTTAAAGGATAAACATAAACTGCTCCTTACATCTTTCTCTGAGAAAACTCCAGTTCAGTCTGTTGAAAGCACCGAGATGTCAGCAGTTGTTTCTCCTCCAAGCATCTCTGAATCAGCTGCCTCCGTGATAATGAAAGGACCAGAGAGCACTGTGCTTCAGCCCTCTTCCCCTCCATCTCCACTCGACTCTCCTACAAAATTGAGCTCTCTGTCAAGAACCACCGATCTGCCCCTGAGTGAAGCCATTCAACAAGAGCTTCTTTCTAAAGCTGCTACCTTTGAGAGTAAAGACATATCGAGCATTGAATGTTCACAACCACCACAGGTCACCTGCTCTCAAGAACAGCCAGGAGCCGTAGCTTTGGACTCTCCAAAGGGCAATGTCCCTGTCAGCTCTGTGTCCCTCGTCCCTCCCCCTCCCCCACCAAAGAACGCTGCCCGCATGCTTGCACTAGCTCTAGCTGAATCTGCCCAGCAGGCCACCATTCTTTCTCAGAAGCAATCCTCTGGACCCCCTACACCAGTATCCCCTCTTAGGCCTCAAGAGTTATTGGAGACCCTGGACTGGCCGCTGCCTTCTTCCTTGCCATCACAGCCATCCGAGGAGGAAACTGCAGTAGAATCATCAAATAAATCGGTTCCTTTGTCTTCACCACCCTCCACTCCACCTGAAAAAATGACTCGCTCAGTCAGTCTGCACCTCACCACAGCTGATAGTGGGAAGCCATCCAGCATTTCATGCAACAGCCAGGATGTAATCTCACCAGAGACCCCAAGCCAGAGTGCTATGCCCTCTTGTCTGACTTCTCATGTTTCTCAAACACAAAAAAGTCCAGAAAAACAGCAGCCTGCTGTCGGTCAGACACCTGTGAGCACAGCAAAAACCACCACCACAACCACCACTTCAACCATCAGCAGTAAGGATGCTGTCATTCAACAACCCACCTCTGAGATCCATATGCCTGAAACAGTCCTGCCACCAAAACCAAACAAGGTGCCAGATCAACCAGTGGCAATTCTTCAGCCTCAGCCTCAAATGCAGACGCAACCTCATACTGCATTTCGGTCTCAACCTCAAGTTCAGCCTCTTCCTCAGTCACAAGCACAGCCACAGTCTCAGCCCAGATCACAGCCCAATGCTAGAGTTGCACCAACCCTGGCAGCACCTCATGATCCTGTGGAAAAACCATGGGAAGCCATAAAGCCTGTCCATCCAAAAGGAGATAGTGCTTCTCAACAACACCACACTCAGGGAGTGACACCACCAACACCCCCTATTCGCTCGATTGAAAGTAAACTAGCAGCAGCTGCACTTTGCAACACCGAGGCTGCAAACCCTGCCAACTTTCATGCCATGTTAGAGACATCCATGAGGGGATCAGTAGAGGAGACTCCCCCACAGTCTCATCCGCCTCACCGCAGATCGTCTACTCATCAGTCAGGTTATCTTTATCACACAAAAGGGGAGGCAGCCTTACTGGACCCCACCACAGAGGCATATTACCATCAGCGGGTAACCCCTTCAGGTCAGGCTACAGTGGGGTACCATTACCGGCCAGAGAGTGTTCCACCTCACATTTCTTACGTGTCAAAATCAGAGCCACACATTTCCTACAGAGGTCATGGGGATGGTCGATACAATACAATTGGACCTAGATCCTACCACCAGTCTATCAAATCTCGTGGTTCACTTAGAAGTGAGTACATCTCTCCAAGCTCATTACACCACTCCCATAGCTACAGCCAAGCAGATGGACCAACCGTCTACCCAACAATTCGCAGGGTCCACTCCTTACATGTGCCTCCCACTGCTATTCGCTCAATGCCAGTCACCAGAACTGAGGTACCACCAGATGATGAGTTATTTTACTACCAGCGCCCAATCTACCACTGCAAGTCTCACCAACCATCATCTCAAGTCGACTATCACGTCACACAACTGCAgccttattttgaaaatggaagAGTTCAGTACCGCTACAGCCCCTACTCTGGCTCTCACGTTCTGGAATCCCCTTTCTATGATGTGGACCATTATGGTACTATCCGCTTAAGGCACGTCCATTCCTTCAGTGGTCGGGACAGTGCCCCTCTCCTTCGATCTGGAGCAAAATCTGGAGGCTACCACTACCTTTCACGGCATGTTATTCCTTTAAAGGAGCATGGCTTCATAAGCAGGGACATGCCACCTTACAGTGGTTCAAAAGGGAGTATTTACTTTGCATGGGACCCAGAGGAGGCAGAAAGGCTGCGCATACACTCCATCCGTAGGGAAAGCAGAGCAAGGCAAAAGGTTAAGGGTTCTGTTATGTCTCAATACGACAATGTAGGACCCTACATGCCTGTGGATGTTGACATGTTACATTTGCGCAGCAAATCAGATCCTGGAAAAACTGTATTGGTGTCCTCGGAGAGCAAAGAGGCCAGATACAATGTTGTGCCTGGATCTCAGCATGCTCCCAGACACTTGATCTCTGATCCAGATGTCCTAATGTATATGGAAACAGAGAAGCACTGCCAAGGAAATGGAATGGGGGAGAAAACCACCAAGCAAGGCAGCTCTAGGACCTACTCGTCTATACATTCACATCAATCCCAGCTTCCACCACTAAGCCGGCAGCACTTACCAGAGGGTGGCCATCATGACCCAAAGTTTGAACCAGGGGAAAAGCAACTGAGTGGTAAACATTGGCAGGAACATTCGGACAGCAGGAGTGCTCAAGCACGTTATGAAAGGTCTGATTTGGATCGCCACATATGCAGGGTGAAGGCCACTAGCAGTGCCAGTGAAGATGAACAAGCTGCTCCTGTGAAGCCGGCTCCTCCACCTAAGCCCGAGAGATCCCATAGTGTTCGAGAGCGGCACCATTACAACCAGTCCAGTCTTCCTGCATATTTACCAGACAATTCAGATAGAGACCACAGTGGAACATACTCCCATCAGTCACAGGGGCAGAGACAAAGCACCGTTACTTTGCAGTCGCATTACGACAACCTGGATGACTATCATCCAGTACCTCAATCCCAAACCACGCTAGCAAATCGGGGTTGTTCCAGTTCCTATCATAGCCCCGGTTTctcaactccacacagtaatcGTGCATACTCCACTGCCTTGGGACAGGGTGCCTTCATACAAGCTGAGCTTTCAGTGCAAAGGCCAGAGACTGAGATAAATGCTGAGTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005938 cell cortex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0001650 fibrillar center cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-147 Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in several cellular components, including Golgi apparatus; actin cytoskeleton; and nuclear lumen. Is expressed in immature eye; nervous system; and optic primordium. Orthologous to human ARHGAP32 (Rho GTPase activating protein 32).

Ensembl:

ensembl_id ENSDART00000058370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039640 lncRNA downstream 629693 23901062 ~ 23910203 (-) True XLOC_019600
TCONS_00038598 lncRNA downstream 631353 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA downstream 631353 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00039639 lncRNA downstream 1385374 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00039638 lncRNA downstream 1387660 23146291 ~ 23152236 (-) False XLOC_019597
TCONS_00039641 lncRNA upstream 46272 24679050 ~ 24686215 (-) True XLOC_019603
TCONS_00038606 lncRNA upstream 573766 25206544 ~ 25209280 (-) True XLOC_019605
TCONS_00039642 lncRNA upstream 583612 25216390 ~ 25222520 (-) False XLOC_019606
TCONS_00039643 lncRNA upstream 586119 25218897 ~ 25222490 (-) False XLOC_019606
TCONS_00039644 lncRNA upstream 586119 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00038600 mRNA downstream 4386 24531679 ~ 24535510 (-) True XLOC_019601
TCONS_00038591 mRNA downstream 792980 23338059 ~ 23746916 (-) False XLOC_019599
TCONS_00038603 mRNA upstream 70410 24703188 ~ 24865217 (-) False XLOC_019604
TCONS_00038604 mRNA upstream 70410 24703188 ~ 24865454 (-) True XLOC_019604
TCONS_00038605 mRNA upstream 573511 25206289 ~ 25213616 (-) False XLOC_019605
TCONS_00038607 mRNA upstream 614155 25246933 ~ 25250594 (-) False XLOC_019607
TCONS_00038608 mRNA upstream 614205 25246983 ~ 25272317 (-) False XLOC_019607
TCONS_00038597 other downstream 792949 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038595 other downstream 1123881 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038594 other downstream 1160645 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038581 other downstream 1498689 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 2168760 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038618 other upstream 819812 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 972755 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038634 other upstream 987627 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038640 other upstream 1070300 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038657 other upstream 1520064 26152842 ~ 26170837 (-) True XLOC_019632

Expression Profile

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