RNA id: TCONS_00038605


Basic Information

Item Value
RNA id TCONS_00038605
length 1529
RNA type mRNA
GC content 0.43
exon number 11
gene id XLOC_019605
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25206289 ~ 25213616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACAGTAACGTTAGTTGTGATGAAAAAGTCGCGCGCCCGTTGCCGGAAGTGGCGTCaattctgttctgttttgttccTGTCGTGGCGGGAATACGCGCTGCTGACGGGCAACATGGATGTTGAAATGAAAGAGACAGACAGTGAACAAACTCAAGCTGACGGACCGCCTAAAAAGGACGAAACTGCACCAAAACCCACAACGACTGCATATGAACTACCATGGGTTGAAAAGTACAGACCTCTGAAGTTAAATGAAATAGTTGGAAATGAGGAAACTGTTAGCAGACTGGAGGTGTTTGCAAGAGAAGGAAATGTGCCCAACATCATCATTGCTGGTCCTCCTGGAACTGGGAAAACCACCAGCATTTTGTGTTTGGCTAGAGCTCTGCTTGGCCCAGCCATGAAAGATGCTGTTCTTGAGCTGAATGCCTCAAATGACCGtgGAATTGACGTTGTGAGAAACAAAATTAAGATGTTTGCCCAGCAAAAGGTCACACTTCCTAAAGGTCGTCACAAGATCATCATCTTGGATGAGGCTGACAGTATGACAGATGGAGCTCAGCAAGCTCTCAGAAGAACAATGGAGATCTACTCCAAAACCACACGCTTTGCCCTGGCATGTAATGCATCAGATAAGATCATAGAGCCCATCCAGTCGCGCTGTGCTGTGCTGCGATACAGCAAACTGCGAGACGAGCAGATCATGATGCGTCTGACGGAGGTGGTAGAGAAGGAAAACCTGCACGTCACCAACGACGGCCTGGAGGCCATCATCTTCACCGCTCAAGGAGACATGAGACAGGCTCTGAATAACCTACAGTCCACCAACTCTGGATTTGGATATATCAACAGTGAAAACGTGTTCAAGgtgtgtgaCGAGCCACATCCTCTGCTGGTAAAAAGCATGCTAGAACATTGTGTTAATGCCAACATCGATGAAGCCTACAAGattATCGAGCAGCTTTGGTCTCTAGGATATTCACCAGAGGACATCATCGGAAACATCTTTAGAGTTTGCAAGACCTTTCAGATGGCAGAATATCTGAAGCTGGAATATATTAAGGAAATCGGCTACACGCATATGAAAGTGGCAGAAGGAGTGAACTCTCTGCTGCAGATGGCTGGTCTGTTGGGGAGACTCTGCAGAAAGACGGCCACCCCTGAAGCAAgctaaaataatattcattactaACTAACCACAACACACGTGACTTTTATACTCTCCAATGTACAATAAAACATTACAAGTTGCAGcaataaaaatttacaaatttgGTTGCTTTTGAATGAGTTTGTTTttaaaggtctttttttttttttttttgtgctattgCATTTAGATTTTTAGTTTTGCAGTTTTGCCGGATGTTAGAAATAGTCAGAAAAGCAAAGCAAATGGCTGTTTAAACATTTTCAGTTTAGTGCTTGATTTATAGAGCACAATGCATTATATATAAGCAGACACCAAACTAGGCCTCATGTCTTCCTCATCAcacctcaataaaaaaaaaaaaatctttgtgcaTGGC

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005663 DNA replication factor C complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-29 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; digestive system; eye; and immature eye. Orthologous to human RFC2 (replication factor C subunit 2).

Ensembl:

ensembl_id ENSDART00000122513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039641 lncRNA downstream 520074 24679050 ~ 24686215 (-) True XLOC_019603
TCONS_00039640 lncRNA downstream 1296086 23901062 ~ 23910203 (-) True XLOC_019600
TCONS_00038598 lncRNA downstream 1297746 23845537 ~ 23908543 (-) False XLOC_019600
TCONS_00038599 lncRNA downstream 1297746 23900923 ~ 23908543 (-) False XLOC_019600
TCONS_00039639 lncRNA downstream 2051767 23151076 ~ 23154522 (-) True XLOC_019597
TCONS_00039642 lncRNA upstream 2774 25216390 ~ 25222520 (-) False XLOC_019606
TCONS_00039643 lncRNA upstream 5281 25218897 ~ 25222490 (-) False XLOC_019606
TCONS_00039644 lncRNA upstream 5281 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00039645 lncRNA upstream 8335 25221951 ~ 25226888 (-) True XLOC_019606
TCONS_00038612 lncRNA upstream 163136 25376752 ~ 25378011 (-) True XLOC_019609
TCONS_00038604 mRNA downstream 340835 24703188 ~ 24865454 (-) True XLOC_019604
TCONS_00038603 mRNA downstream 341072 24703188 ~ 24865217 (-) False XLOC_019604
TCONS_00038602 mRNA downstream 573511 24539896 ~ 24632778 (-) False XLOC_019602
TCONS_00038601 mRNA downstream 573511 24539896 ~ 24632778 (-) True XLOC_019602
TCONS_00038600 mRNA downstream 670779 24531679 ~ 24535510 (-) True XLOC_019601
TCONS_00038607 mRNA upstream 33317 25246933 ~ 25250594 (-) False XLOC_019607
TCONS_00038608 mRNA upstream 33367 25246983 ~ 25272317 (-) False XLOC_019607
TCONS_00038609 mRNA upstream 51617 25265233 ~ 25272416 (-) True XLOC_019607
TCONS_00038610 mRNA upstream 62077 25275693 ~ 25295087 (-) False XLOC_019608
TCONS_00038611 mRNA upstream 62080 25275696 ~ 25295087 (-) True XLOC_019608
TCONS_00038597 other downstream 1459342 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038595 other downstream 1790274 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038594 other downstream 1827038 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038581 other downstream 2165082 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 2835153 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038618 other upstream 238974 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 391917 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038634 other upstream 406789 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038640 other upstream 489462 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038657 other upstream 939226 26152842 ~ 26170837 (-) True XLOC_019632

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_04538991_04543506.mRNA True 1091 mRNA 0.46 10 CI01000006 4538991 ~ 4543604 (+)