RNA id: TCONS_00038607


Basic Information

Item Value
RNA id TCONS_00038607
length 755
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_019607
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25246933 ~ 25272416 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGTGGCAGGGGCCAAAGGTGTAACGCTGGGCACCGCTGGCACAGGATCTACCCTTTCACTGGGCACCGCTGCTGCTACGGTCAGACAGGTGCCGGTCAGCGCTACTGTCGTCACCACACAAACTGGCAAGCTTCCAACGAGGATCACGGTGCCTCTCTCCGTCCTCAGCCAGCCTTTAAAAAATAAGAGTGTGGTCACCACCCCCATCCTCAAAGGGAACATCAGCACCAATATCAGCAATCTTGGCAGGAACATTATCTTGACTACAATGCCTGCGGGCACCAAGTTGATTGCTGGGAACAAGCCTGTCAGTTTTGTCACAGCTCAGCAACTTCAGCAGCTCCAGCAGCAAGGACAGGCCACACAGGTTCGAATCCAGACGGTTCCGGCCCAGCAGTTACAGCGCACAGCTGCCAGCTCTCCCAAATCTACAGTTTCTACAGTGGTGGTTTCAACAGCACCGTCACCCAAGACCAACCCAGACCCTCAGTAAATGCTGAATGCTGCAGGTCAAAAAAGGAAGTGTGATTTGCTTGCTGATGTTATCATTTATGAGCAGCACTGTGTATCAACCTAAGATCTTGGTTAAAGTGAATGGCCTTACTCTAGAAAATGCTGACGTACACCGAAGCAGGTTTTGTTTGATGTTTATTTGTGCTTTCTATATCTTATcttctaaaaaaatgtaatttaacaaGTACTGTGTTCGGTAGTAATATTGCATTGTGATAAATAAATGATCGTGATAATC

Function

GO:

id name namespace
GO:0031011 Ino80 complex cellular_component
GO:0002020 protease binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-6419 Predicted to enable protease binding activity. Predicted to be part of Ino80 complex. Orthologous to human NFRKB (nuclear factor related to kappaB binding protein).

Ensembl:

ensembl_id ENSDART00000163862

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039645 lncRNA downstream 20045 25221951 ~ 25226888 (-) True XLOC_019606
TCONS_00039642 lncRNA downstream 24413 25216390 ~ 25222520 (-) False XLOC_019606
TCONS_00039644 lncRNA downstream 24413 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00039643 lncRNA downstream 24443 25218897 ~ 25222490 (-) False XLOC_019606
TCONS_00038606 lncRNA downstream 37653 25206544 ~ 25209280 (-) True XLOC_019605
TCONS_00038612 lncRNA upstream 126158 25376752 ~ 25378011 (-) True XLOC_019609
TCONS_00038626 lncRNA upstream 345122 25595716 ~ 25597577 (-) False XLOC_019616
TCONS_00038628 lncRNA upstream 348494 25599088 ~ 25601609 (-) True XLOC_019616
TCONS_00039646 lncRNA upstream 496582 25747176 ~ 25748927 (-) True XLOC_019624
TCONS_00038648 lncRNA upstream 545744 25796338 ~ 25799633 (-) True XLOC_019627
TCONS_00038605 mRNA downstream 33317 25206289 ~ 25213616 (-) False XLOC_019605
TCONS_00038604 mRNA downstream 381479 24703188 ~ 24865454 (-) True XLOC_019604
TCONS_00038603 mRNA downstream 381716 24703188 ~ 24865217 (-) False XLOC_019604
TCONS_00038602 mRNA downstream 614155 24539896 ~ 24632778 (-) False XLOC_019602
TCONS_00038601 mRNA downstream 614155 24539896 ~ 24632778 (-) True XLOC_019602
TCONS_00038609 mRNA upstream 14639 25265233 ~ 25272416 (-) True XLOC_019607
TCONS_00038610 mRNA upstream 25099 25275693 ~ 25295087 (-) False XLOC_019608
TCONS_00038611 mRNA upstream 25102 25275696 ~ 25295087 (-) True XLOC_019608
TCONS_00038613 mRNA upstream 130081 25380675 ~ 25395223 (-) True XLOC_019610
TCONS_00038614 mRNA upstream 148539 25399133 ~ 25416391 (-) True XLOC_019611
TCONS_00038597 other downstream 1499986 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038595 other downstream 1830918 23409087 ~ 23416015 (-) False XLOC_019599
TCONS_00038594 other downstream 1867682 23367219 ~ 23379251 (-) False XLOC_019599
TCONS_00038581 other downstream 2205726 23038166 ~ 23041207 (-) True XLOC_019594
TCONS_00038535 other downstream 2875797 22371030 ~ 22371136 (-) True XLOC_019565
TCONS_00038618 other upstream 201996 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038630 other upstream 354939 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038634 other upstream 369811 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038640 other upstream 452484 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038657 other upstream 902248 26152842 ~ 26170837 (-) True XLOC_019632

Expression Profile

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