XLOC_019611 (sms)


Basic Information

Item Value
gene id XLOC_019611
gene name sms
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25399133 ~ 25416391 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038614
tcctcctCCCGCCGGCGTGCTGCTTCTCTCTGACACCACCACAGACTCTCCACCGATTCACCTCCGGCTGCCTCATCCAGGCATGGCAGACGGCTTTACCCCATCATGGCAGTGCTACATTACACCCTCGACTTCAAGCTCCGCGCGCCAGCTGATGTCTCTGCGACTGTGCGTGGCCTGCAGTCTATATTTCAAGAGCAGGAAATGACAGAGAATGTCCACGACTCTGAGGGACACGGATATCTGGCCACCTTCATCGGCAAGAATAGCAGgTTTGCCATCTTACGAATGCACTCCCATGGTCTGGTGACCTTTGACCTGCAGTGTCTTGAAGGAGACGATGCAGCGCAAGTGGACAATCTACTGAATGCACTGGAGAAAAAATTAAAGGCTCTTCTAGATGGAAATATCCAAAGGATCAAGAGACTCCCTGCGCTGATTCGAGGCAGTGATGTGGATCGGTACTGGCCCACGGCTGACGGCAGGCTGATGGAGTACGACATTGATGAAGTTGTGTATGAAAAGGATTCTGCCTACCAGAACATCAAAATCTTGCACTCGCGACAGTTTGGCAATATGCTCATCCTTAACGGGGATGTCAATCTGGCAGAGAGTGATCTGCCCTACACTCAGGCCATTATGGGCAGCGGCAAAGAGCACTATGCTGGAAAGGAGGTACTTATTCTGGGAGGAGGAGACGGTGGGATTCTCCACGAAGCGGTGAAGCTCAAACCAAAGATGATCACCATGGTTGAGATTGATGAACTGGTGATTGATGGATGTCGGAAACACATGAGGAAGACCTGTGGGAATGTTTTAGATAACTTGAAGGGAGATTGTTACGAGATTTTGGTGCAAGATTGTGTTCCTGTACTGAAAAAGTTTGCAGAGCAAGGGAGGACATTTGATTATGTCATCAATGACTTGACAGCAGTCCCTATTTCCACAGCACCTGAGGAGGATTCAACATGGGAGTTCCTGAGACTCATCCTTGACCTCTCGATCAGAGTTTTGCGGCCAGGTGGGAAGTATTTCACACAGGGTAATTGTGTGAACCTGACTGATGCGCTCAACGAATATGAAAAGCTTTTGGGGAGACTTTCATGCAAAGTCGACTTTTCCAAAGAGGTGGTGTGTGTTCCCTCCTATATGGAGCTATGGGTGTTTTACACCATCTGGAAGAAGTAATGTCTCTTCCTCCTGCCGCAATGTGAAGACCCACTGATGCACTGAGGGGAGACGTGCACATATCTCTCTGTTTCTGCTGTCCCTCCACGTCCACAAATCAGCCTTCCCTTCGTTCGGCTCTTTGTATTGTTGTGTTTGAAGTTTCCTGAGCTCTCGGTTTTGTTGGTCTGATGTTGTTTTGCGTGGGCTCCTCCAGAGAGCGCTGTGGTGCCGTGTGTGATGATACTGAAGCCTGGAGGACGGCGAAGCATCCAGACGCATTTTCTGACTCCGGCCTTTGAGGATTTGCTGTTATGATTCAGATTTTACATTGCTCTTTGTGTTTTAGTGTAGCTCCGcagctttttttttgcatcataTTGTAACTGTGGCTTGAGAGTGATTTGATTTATGGTGCTTCACAGGGAGTTCATTGGCAGTGTTGCATTCTGGAAGTTCACCGAATAGTCTATAATTGAAGCCCCCAAATATGTCTTAAAAGGGAAAACAAAGTCCTTGCTgtggcaattttcatttttgttttatttttcgcTGAACTGTGAATGTTAACTTCTTTTTATAATTAGGTCCAAAGTAGGTTTCCCTGCTTGATgtttttgcataatttttttatatatatataaatataaagaaagaaGGTTTTACTGAATGTAGGCCACTTAGATTCATGCCTTTTATTCATTTTGTGGTGCTTCgttgatattatttatttgattttatttcaccTTATGCCATTGATCCTGCCCTGAAAAGTAACTCCTGTTAATGAGAGTGAGAATCATCTATTAAAGCATACGAAGAGAATATGA

Function

symbol description
sms Predicted to enable spermine synthase activity. Acts upstream of or within spermine biosynthetic process. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Snyder type. Orthologous to human SMS (spermine synthase).

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0006597 spermine biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016768 spermine synthase activity molecular_function

KEGG:

id description
ko00270 Cysteine and methionine metabolism
ko00330 Arginine and proline metabolism
ko00480 Glutathione metabolism
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040625-150 Predicted to enable spermine synthase activity. Acts upstream of or within spermine biosynthetic process. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Snyder type. Orthologous to human SMS (spermine synthase).

Ensembl:

ensembl_id ENSDARG00000008155

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038614 True 1997 mRNA 0.45 11 25399133 25416391

Neighbor

gene id symbol gene type direction distance location
XLOC_019610 ppme1 coding downstream 3910 25380675 ~ 25395223 (-)
XLOC_019609 BX510938.1 coding downstream 21122 25376752 ~ 25378011 (-)
XLOC_019608 st14b coding downstream 104046 25275693 ~ 25295087 (-)
XLOC_019607 nfrkb coding downstream 126717 25246933 ~ 25272416 (-)
XLOC_019606 NA coding downstream 172245 25216390 ~ 25226888 (-)
XLOC_019612 cnksr2b coding upstream 4977 25421368 ~ 25522906 (-)
XLOC_019613 si:dkey-17e16.9 coding upstream 128491 25544882 ~ 25555355 (-)
XLOC_019614 MRPS12 coding upstream 144893 25561284 ~ 25565428 (-)
XLOC_019615 NPAS4 coding upstream 153637 25570028 ~ 25573064 (-)
XLOC_019616 efemp2b coding upstream 172045 25588436 ~ 25604609 (-)
XLOC_019603 NA non-coding downstream 712918 24679050 ~ 24686215 (-)
XLOC_019600 CR936479.1 non-coding downstream 1488930 23845537 ~ 23910203 (-)
XLOC_019597 NA non-coding downstream 2244611 23146291 ~ 23154522 (-)
XLOC_019633 NA non-coding upstream 834985 26251376 ~ 26395308 (-)
XLOC_019640 NA non-coding upstream 1184570 26600961 ~ 26603641 (-)
XLOC_019643 BX465841.1 non-coding upstream 1285430 26701821 ~ 26701954 (-)
XLOC_019645 NA non-coding upstream 1404531 26820922 ~ 26825306 (-)
XLOC_019649 NA non-coding upstream 1771733 27188124 ~ 27191434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04455069_04463903 SMS coding CI01000006 null 4455069 ~ 4463925 (+)