XLOC_019615 (NPAS4)


Basic Information

Item Value
gene id XLOC_019615
gene name NPAS4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25570028 ~ 25573064 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038622
AAAACTACCGGATAAATGGGCAAAGAAACGATGTTTTTTCCAATTGCTGAGTAGTTTATCCACAACTTTAAAGAAGTTATGTTCGAGTAGCTCCCATTGTAGCGGTTTTCACTTGATTATTCGTCCGTTTCAACGATTCTTCGGACTCGAGAAAATGTACCGGTCCACTAAAGGAGCCTCGAAAGCTCGGAGGGATCAAATCAACGCGGAAATCCGCAGCTTGAAGGAACTTCTGCCCATCTCTGATGCTGACAAAGCTCGTCTTTCCTACCTTCACATCATGTCACTGGCCTGCATTTACACAAGGAAGTCCGTCTTTTTCTCTCAAGCTGCGGCAGGTCACGGTATGAGCGGAAGCCTCTTGTCTTTGCCAGAGCTCTCGGATCTCTTACACACACTCCCAGGATTTCTCCTAGTGCTGACAAGTGAAGGAAAACTTCTGTATCTGTCGGACAATGTCGCAGAGCACCTGGGTCATTCCATGGTGGATCTAGTGGCTCAGAGTGACAGCGTGTATGATATTATAGACCCGGTTGATCACTTCATCATGAGGGGCAACCTTGTGCCAATCACCACACCTGACACAGACCGCCTCTTTCGCTGCCGGTTCAGCACTTCAAAGTTTGTAAGAAGGCAGGGATCTGGCAACAAACAGGCGATTGTTCGGGCTCGCTGTCTGCCACCTCCATACCATGCATCTCCCTACTGGACATCCAACCCAGTGTGGGTGTGTTTCTGCTCCCCATTGGAAGCTAGCATGCCCCAGCTATCAACATCCAGGAACCCTCTTCCGACTCCACCAGCGGAGCAGTCTTTCCTGCTGTCCTGTTTTCAGTCTCAGCACAGCCGAgacatgaggatccacacagtTCAGGACAGtGTAAGTGTTTATCTTGGCTATGACATCGAGACTCTGCGTTCCCGCTCGTGGTACAGTCTGATTCATCCTCGCGATCTCTCGCACGCCTCTGCACAACACTGCACCCTGtTGCATAATGGAGGCGAGAGGCAGGTGGAGATGGTGGTCCAGGTGGAGGCAGCAGATCACTCTTGGATTTGGCTCTACATTGTTCTTCAGCTGGAGACTGGAGAATATCCCATCAACAGCCACAACTATGTCATAAGTGAGTCTGAAGCCTGGTCGGTACGTCAGCAGTTGCACTCAGAGCAAAACCAACTGGCTCTCCTGTACCAGGAGTCACGCCAGAGCTCTGACCCTCTGTCCAGCCCAGATCAGGTCTTCACGCCCAGCAGCAGTGGCCTGTCCTCCCAGTCCTTCGACTTCAGCTTCATCACTTCTGGACGAAGCTCCTCTGAAGAGCTCCCTGGTACCTCTGCCCCATCCAGCATGACATTCGACCCACTTGAGGGCGAAGAGATCGACCCACAGTCACACGGTGGTGGTCACCAGATGTGGCGATCAGCCATGACCATTGCCCCCGAACATCTAAGTAACATCAACCTTTCTACTGTTCCCCAATCCCAAGTTGCCCCTCCACCCCTTCCTCCATTCAAAGCTCCTCCAAAGCGCCAAAGATCAGAGGAGTTTATCTGCACCCCTCCTTACACCCCAAGACTTAGTGGGGGGAGTTTCATATTTAATGATGAAACCTTAAGACCATCAGATCATAGCAAATCAGCTAAAATGAGGCAGTCTATAACCTCAGCCACCAACATTGGCCCTGCTCAACCCTGCCGCAAGCGTCTTTATGAAACTTTGCCTCCTACACCAGATAGCCCAGGCAGTGACGAATGTATTCTCATGGCGCT
>TCONS_00038623
ATGTACCGGTCCACTAAAGGAGCCTCGAAAGCTCGGAGGGATCAAATCAACGCGGAAATCCGCAGCTTGAAGGAACTTCTGCCCATCTCTGATGCTGACAAAGCTCGTCTTTCCTACCTTCACATCATGTCACTGGCCTGCATTTACACAAGGAAGTCCGTCTTTTTCTCTCAAGTAATGTCTAAAGTCAtaacaattcagcatttgatgtaa

Function

symbol description
npas4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus and postsynapse. Predicted to be part of chromatin.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000087753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038622 False 1770 mRNA 0.51 7 25570028 25573064
TCONS_00038623 True 213 mRNA 0.45 2 25571651 25572910

Neighbor

gene id symbol gene type direction distance location
XLOC_019614 MRPS12 coding downstream 4600 25561284 ~ 25565428 (-)
XLOC_019613 si:dkey-17e16.9 coding downstream 14673 25544882 ~ 25555355 (-)
XLOC_019612 cnksr2b coding downstream 47122 25421368 ~ 25522906 (-)
XLOC_019611 sms coding downstream 153637 25399133 ~ 25416391 (-)
XLOC_019610 ppme1 coding downstream 174805 25380675 ~ 25395223 (-)
XLOC_019616 efemp2b coding upstream 15372 25588436 ~ 25604609 (-)
XLOC_019617 fibpb coding upstream 32304 25605368 ~ 25613249 (-)
XLOC_019618 fosl1b coding upstream 41363 25614427 ~ 25618175 (-)
XLOC_019619 tmem223 coding upstream 47145 25620209 ~ 25625183 (-)
XLOC_019620 tmem179b coding upstream 91329 25664393 ~ 25669820 (-)
XLOC_019609 BX510938.1 non-coding downstream 192017 25376752 ~ 25378011 (-)
XLOC_019606 NA non-coding downstream 343140 25216390 ~ 25226888 (-)
XLOC_019603 NA non-coding downstream 883813 24679050 ~ 24686215 (-)
XLOC_019600 CR936479.1 non-coding downstream 1659825 23845537 ~ 23910203 (-)
XLOC_019597 NA non-coding downstream 2415506 23146291 ~ 23154522 (-)
XLOC_019633 NA non-coding upstream 678312 26251376 ~ 26395308 (-)
XLOC_019640 NA non-coding upstream 1027897 26600961 ~ 26603641 (-)
XLOC_019643 BX465841.1 non-coding upstream 1128757 26701821 ~ 26701954 (-)
XLOC_019645 NA non-coding upstream 1247858 26820922 ~ 26825306 (-)
XLOC_019649 NA non-coding upstream 1615060 27188124 ~ 27191434 (-)

Expression


Co-expression Network