XLOC_019616 (efemp2b)


Basic Information

Item Value
gene id XLOC_019616
gene name efemp2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25588436 ~ 25604609 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038624
TCCCAACAGATTTCAGTGCCTAGGTCTTGTTTGTGCTCTGCTATATGCTGCCAGAAAGAGATATAAGGAGACTTTGAGACTGAAGAATATAGCAAGAAAAGAACTGAACAGACCCTCCTGCACTTCTGTTCCCTCTCTCATTGAACCTTTTGGAGTAAAAGTGTTTTAACAACACCTATACATTTGTTCAGCCCTCCTTCCAGCTGTGTATGTGACAGTGTGAGTGTCCTGTAACTATGAAGGCCAcatatgtgtttgtttgcgtGGGTCTGGCTCTTCTTCCTGGTACAATCTGCCAGTCTCCTGCTGAAAGTGAAGCTTACACAGACTGTACAGATGGCTATGAGTGGGACGAGCAGACTCAACTCTGTCGAGACATAAATGAGTGTGAGACCATTCTGGAGGCCTGTCGAGGAGAAATGAAGTGCTTCAATCATTATGGTGGTTACCTGTGTCTTCCTCGCTCCTCCTACGTGATCACTGCACCTGAGACTGCCAGCCAATCAGAGCCCAATGTGCCTGTGCCAGTGCCAGAAAACGAGGCCTTCAACCCATGTCCACTTGGCTACAGGGCCCAAGGAGAGTCCTGCGTGGataTTGATGAGTGTGAGCTGAACATGCATGACTGCCAGCCCAGCCAGGAATGTATCAACACAGTGGGCACCTTCACCTGTCAGTGTCCTGACGGCTACAGCAAGATTGGCATAGAGTGTGTGGATATCGACGAGTGCAGGTACAGGTACTGTCAGCATCGCTGTGTGAACGTGCCAGGATCTTTCTCTTGTGAGTGTGAACCAGGCTTTCAGCTGGCTGGAAACAACCGATCCTGTGTTGATGTAAATGAGTGTGAAATGGGAGCACCTTGTCAGCAAAGGTGTTACAACAGTTACGGGACGTTCCTGTGCCGCTGTGATCAAGGCTATGACCTGGGACCTGATGGCTACTCATGCAATGACATCAACGAGTGCAGCTACTCCAGTATCTTGTGCCAgtatcagtgtgtgaatgagcCTGGAAAATTCTCCTGTGTTTGTCCAGAAGGCTACGAGCTACTTGGATCTCGACTCTGCCAGGatgtgaatgagtgtgagacTGGCAGTCATCAGTGTGGAGAAGGACAGGTCTGTGTGAACATCCATGGAGGACATCAGTGTGTGAGCGCCAACCGCTGCCAGGAGCCCTACATCCAGGTCTCAGAGAAtCGTTGTATTTGTCCGGTAGTGAAGCCGGAGTGCCGTGATCTGCCCTTCTCTATTGTGCATCGATACATGAGCATCACGTCTGAACGCTCCGTTCCCTCCGACATCTTCCAGATTCAGGCCACCAGTGTCTATCCTGGAGCCTACAACTCCTTCCGCATCCGATCTGGAGACCAAAATGAGGAATTCTACATACGGCAAATCAACAACATCAGTGCTATGCTGGTTTTGGCGCGGACCGTGACGGGGCCGAAGGAGTACGTCCTGGACCTGGAGATGCAGTCGGTAAATCCACTGATGAACTACCAGACCAGCTCAGTCCTGCGCCTCGCCGTTTACATCGGCCCTCATGTCTTCTGAACACACTGAGAAACAGACGGAGCAACACAAGGTTTTCTCTAGTCAGTCTATTTCTGCTTTCATGAGTTGAAAATTAGCAACACTTTCCTCTAATTCACAAGCTAATAATGTGACTTCGGTCTGTGACTGTGCTTTATTCTGGGAAGTGTGAACGCATCtgaacattcatttattcctctCACTTTGTCATCGTAGACTCATTTTTACACATCCAGTACAtgagaaacacaaacacaaaacaatttgTTTGAATCGAGGCATTGTTTCTTATTAATAGCTCAATACATTTAAAGTTATCTAATCTGCATGAGATATACATACAGTCCAGCCTTAAAATGTGTCTGCTGTGTACTTTCCAAAAACActaacaaactaaaaacaaatccAGAACTGAAATGAGGTGAATATGAGAGGATTAAATGAATTATGTAAATAATCTGAGACACAATTCTTAGGTAACTTGTTGCATTTTCTTTAGTATTTTTCAATGTCagatttttgtattgatttgtcttttgaaatatttttaatgttttagtatattgatttttttatttacatatgttaaagtaaaaatgtttgattaaatacAAGTAAACTAAAAAAAGCTCTTTATATCTTTCTGTTCATgattttcttccttttttgtcTTTCCTTTGGTCATCTGTAAGTCAGTCAGCCCCAGCTGAATCAAAATATTCCTTTCTGTGTGCATGCAGATATTTTTGTGCAAATGGACAGGTTAGTATATGAAATGTATTTCTCAGGTGTCTCCACATGGTGACAGTGtagcactaatacacacacacacacatgctataATTTTACCTTTGTACAATGAGCTAAAATAACAGTTATTAAAGTCACGGCTAAAAGCCAAAGTTCACAAGCGTGTAGCTCTAAATAACATCACATTTACAGGCTCTTTCAGGGCTACTTTAATCAACCTTTTTATTGTGAAAATCCTTGATTTTATTGTAAGAAATTTGTTGTTGGGTGGATTTAGATTTATTGTAAATTTATTGTTTCATGTCAAACATTTCAATAAGTTGATGCACTGCAggttaaaaacaataaatcttttactattataaaattaatacttttactATTTTTCCCCATGCAACTAACTGATTACACTAAGAATTGCAAAGTGTTTTTGCACTGCAAGTTTTCtcaaatgttatgtttaaatatgcaaattagataTATTTAATTAGGTATTCAAATatctaatttgcatacatttctaacacgaaaatatatttttgtatatatattttttgaagatTAAATACAGATATGAATAGAACTGTGAAGTTTtttgtatgaaaaaaaatattatgaaacatTATGTACTATACTTGAAATCTACCGACACAAACTCACATTGCTCAGTATAAGTACACGCCTCACAAATCtaaattttaaattcatatttttaataggaagctatacaatattatatttgtgcatatacgttagattaatcagtactgaacctaaatctggagctcatctaacaaaataacttacgataacgttccaaaaactagtacagcgaAATTTATgttgtagaaaaatattaaaaacaaattttaaaaaaagaggaaaaatcaaaagaagcaagaaaatgaaaaatttagttgaaattttgtaggttgtttttttttttttttttttttttttgcaatatttagcttgaatttaattgtattatctttcaatttctaaatatgtttggtgactaaaatattattttaataaatacatctgtttaataaa
>TCONS_00038625
CTGTTCCCTCTCTCATTGAACCTTTTGGAGTAAAAGTGTTTTAACAACACCTATACATTTGTTCAGCCCTCCTTCCAGCTGTGTATGTGACAGTGTGAGTGTCCTGTAACTATGAAGGCCAcatatgtgtttgtttgcgtGGGTCTGGCTCTTCTTCCTGGTACAATCTGCCAGTCTCCTGCTGAAAGTGAAGCTTACACAGACTGTACAGATGGCTATGAGTGGGACGAGCAGACTCAACTCTGTCGAGACATAAATGAGTGTGAGACCATTCTGGAGGCCTGTCGAGGAGAAATGAAGTGCTTCAATCATTATGGTGGTTACCTGTGTCTTCCTCGCTCCTCCTACGTGATCACTGCACCTGAGACTGCCAGCCAATCAGAGCCCAATGTGCCTGTGCCAGTGCCAGAAAACGAGGCCTTCAACCCATGTCCACTTGGCTACAGGGCCCAAGGAGAGTCCTGCGTGGataTTGATGAGTGTGAGCTGAACATGCATGACTGCCAGCCCAGCCAGGAATGTATCAACACAGTGGGCACCTTCACCTGTCAGTGTCCTGACGGCTACAGCAAGATTGGCATAGAGTGTGTGGATATCGACGAGTGCAGGTACAGGTACTGTCAGCATCGCTGTGTGAACGTGCCAGGATCTTTCTCTTGTGAGTGTGAACCAGGCTTTCAGCTGGCTGGAAACAACCGATCCTGTGTTGATGTAAATGAGTGTGAAATGGGAGCACCTTGTCAGCAAAGGTGTTACAACAGTTACGGGACGTTCCTGTGCCGCTGTGATCAAGGCTATGACCTGGGACCTGATGGCTACTCATGCAATGACATCAACGAGTGCAGCTACTCCAGTATCTTGTGCCAgtatcagtgtgtgaatgagcCTGGAAAATTCTCCTGTGTTTGTCCAGAAGGCTACGAGCTACTTGGATCTCGACTCTGCCAGGatgtgaatgagtgtgagacTGGCAGTCATCAGTGTGGAGAAGGACAGGTCTGTGTGAACATCCATGGAGGACATCAGTGTGTGAGCGCCAACCGCTGCCAGGAGCCCTACATCCAGGTCTCAGAGAAtCGTTGTATTTGTCCGGTAGTGAAGCCGGAGTGCCGTGATCTGCCCTTCTCTATTGTGCATCGATACATGAGCATCACGTCTGAACGCTCCGTTCCCTCCGACATCTTCCAGATTCAGGCCACCAGTGTCTATCCTGGAGCCTACAACTCCTTCCGCATCCGATCTGGAGACCAAAATGAGGAATTCTACATACGGCAAATCAACAACATCAGTGCTATGCTGGTTTTGGCGCGGACCGTGACGGGGCCGAAGGAGTACGTCCTGGACCTGGAGATGCAGTCGGTAAATCCACTGATGAACTACCAGACCAGCTCAGTCCTGCGCCTCGCCGTTTACATCGGCCCTCATGTCTTCTGAACACACTGAGAAACAGACGGAGCAACACAAGGTTTTCTCTAGTCAGTCTATTTCTGCTTTCATGAGTTGAAAATTAGCAACACTTTCCTCTAATTCACAAGCTAATAATGTGACTTCGGTCTGTGACTGTGCTTTATTCTGGGAAGTGTGAACGCATCtgaacattcatttattcctctCACTTTGTCATCGTAGACTCATTTTTACACATCCAGTACAtgagaaacacaaacacaaaacaatttgTTTGAATCGAGGCATTGTTTCTTATTAATAGCTCAATACATTTAAAGTTATCTAATCTGCATGAGATATACATACAGTCCAGCCTTAAAATGTGTCTGCTGTGTACTTTCCAAAAACActaacaaactaaaaacaaatccAGAACTGAAATGAGGTGAATATGAGAGGATTAAATGAATTATGTAAATAATCTGAGACACAATTCTTAGGTAACTTGTTGCATTTTCTTTAGTATTTTTCAATGTCagatttttgtattgatttgtcttttgaaatatttttaatgttttagtatattgatttttttatttacatatgttaaagtaaaaatgtttgattaaatacAAGTAAACT
>TCONS_00038626
ATCGACGAGTGCAGGTACAGGTACTGTCAGCATCGCTGTGTGAACGTGCCAGGATCTTTCTCTTGTGAGTGTGAACCAGGCTTTCAGCTGGCTGGAAACAACCGATCCTGTGTTGATGTAAATGAGTGTGAAATGGGAGCACCTTGTCAGCAAAGGTGTTACAACAGTTACGGGACGTTCCTGTGCCGCTGTGATCAAGGCTATGACCTGGGACCTGATGGCTACTCATGCAATGGTTAGTGTACAAGACTTTAACCAAATTGTTACTAATGCCTCATTTCCACTGACTgttacagtacggtacggttcgggtcggtacgggtcacctttatcaggcttgcatttccatcACAAAGGGTAACgttacccttttggtgggcgtggtgtatgacaaagttttagTCTACGTCATGCTCGCTCAAATAAATGTCTATGGAAAAGCTGTACgagtcgttcacatatcataatgagcagcacttctcacaaaacagatgctttatacacataaatactggtttataaatgtttattactaacttttctatgaatataatttgattataactgcagatcaatgactatgaaaataggctactgtaaaaaaatatgtactgtactgtataaaattaatacataaatgcaaaatatatgaacacatac
>TCONS_00038627
CAGATTTCAGTGCCTAGGTCTTGTTTGTGCTCTGCTATATGCTGCCAGAAAGAGATATAAGGAGACTTTGAGACTGAAGAATATAGCAAGAAAAgtcTCACCTCTCCTGTTTGCCTGCCCTCTTTTTATATCCCCAAAGGAACTGAACAGACCCTCCTGCACTTCTGTTCCCTCTCTCATTGAACCTTTTGGAGTAAAAGTGTTTTAACAACACCTATACATTTGTTCAGCCCTCCTTCCAGCTGTGTATGTGACAGTGTGAGTGTCCTGTAACTATGAAGGCCAcatatgtgtttgtttgcgtGGGTCTGGCTCTTCTTCCTGGTACAATCTGCCAGTCTCCTGCTGAAAGTGAAGCTTACACAGACTGTACAGATGGCTATGAGTGGGACGAGCAGACTCAACTCTGTCGAGACATAAATGAGTGTGAGACCATTCTGGAGGCCTGTCGAGGAGAAATGAAGTGCTTCAATCATTATGGTGGTTACCTGTGTCTTCCTCGCTCCTCCTACGTGATCACTGCACCTGAGACTGCCAGCCAATCAGAGCCCAATGTGCCTGTGCCAGTGCCAGAAAACGAGGCCTTCAACCCATGTCCACTTGGCTACAGGGCCCAAGGAGAGTCCTGCGTGGataTTGATGAGTGTGAGCTGAACATGCATGACTGCCAGCCCAGCCAGGAATGTATCAACACAGTGGGCACCTTCACCTGTCAGTGTCCTGACGGCTACAGCAAGATTGGCATAGAGTGTGTGGATATCGACGAGTGCAGGTACAGGTACTGTCAGCATCGCTGTGTGAACGTGCCAGGATCTTTCTCTTG
>TCONS_00038628
TTTAACAACACCTATACATTTGTTCAGCCCTCCTTCCAGCTGTGTATGTGACAGTGTGAGTGTCCTGTAACTATGAAGGCCAcatatgtgtttgtttgcgtGGGTCTGGCTCTTCTTCCTGGTACAATCTGCCAGTCTCCTGCTGAAAGTGAAGCTTACACAGTGAGTATGTATGACAATTTCTCCATGTTCCTTCTCCACATGAGCATGTCTGTCTGACTTCCTACTTAAATGTCCTTGTATTTTATGCTGCCGGGCTGAGGGTTGCATTAGAAGTCATGTTCCCGTCAGCAaatgtgtttgagtgtgagtgCTGGTGAGTAAAGATAACACATAATACAGTGTGTTTTCTCTTCCAGGACTGTACAGATGGCTATGAGTGGGACGAGCAGACTCAACTCTGTCGAGACATAAATGAGTGTGAGACCATTCTGGAGGCCTGTCGAGGAGAAATGAAGTGCTTCAATCATTATGGTGGTTACCTGTGTCTTCCTCGCTCCTCCTACGTGATCACTGCACCTGAGACTGCCAGCCAATCAGAGCCCAATGTGCCTGTGCCAGTGCCAGAAAACGAGGCCTTCAACCCATGTCCACTTGGCTACAGGGCC

Function

symbol description
efemp2b Predicted to enable calcium ion binding activity. Predicted to act upstream of or within elastic fiber assembly. Predicted to be located in extracellular space. Is expressed in several structures, including hindbrain neural plate; mesoderm; musculature system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in aortic aneurysm; arterial tortuosity syndrome; autosomal recessive cutis laxa type IB; endometrial cancer; and osteosarcoma. Orthologous to human EFEMP2 (EGF containing fibulin extracellular matrix protein 2).

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-125 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within elastic fiber assembly. Predicted to be located in extracellular space. Is expressed in several structures, including hindbrain neural plate; mesoderm; musculature system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in aortic aneurysm; arterial tortuosity syndrome; autosomal recessive cutis laxa type IB; endometrial cancer; and osteosarcoma. Orthologous to human EFEMP2 (EGF containing fibulin extracellular matrix protein 2).

Ensembl:

ensembl_id ENSDARG00000020811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038624 False 3344 mRNA 0.39 11 25588436 25604609
TCONS_00038625 False 2034 mRNA 0.45 10 25589621 25601648
TCONS_00038626 False 660 lncRNA 0.40 2 25595716 25597577
TCONS_00038627 False 823 mRNA 0.49 6 25597513 25604603
TCONS_00038628 True 608 lncRNA 0.47 2 25599088 25601609

Neighbor

gene id symbol gene type direction distance location
XLOC_019615 NPAS4 coding downstream 15372 25570028 ~ 25573064 (-)
XLOC_019614 MRPS12 coding downstream 23008 25561284 ~ 25565428 (-)
XLOC_019613 si:dkey-17e16.9 coding downstream 33081 25544882 ~ 25555355 (-)
XLOC_019612 cnksr2b coding downstream 65530 25421368 ~ 25522906 (-)
XLOC_019611 sms coding downstream 172045 25399133 ~ 25416391 (-)
XLOC_019617 fibpb coding upstream 759 25605368 ~ 25613249 (-)
XLOC_019618 fosl1b coding upstream 9818 25614427 ~ 25618175 (-)
XLOC_019619 tmem223 coding upstream 15600 25620209 ~ 25625183 (-)
XLOC_019620 tmem179b coding upstream 59784 25664393 ~ 25669820 (-)
XLOC_019621 phkg1b coding upstream 71488 25676097 ~ 25685768 (-)
XLOC_019609 BX510938.1 non-coding downstream 210425 25376752 ~ 25378011 (-)
XLOC_019606 NA non-coding downstream 361548 25216390 ~ 25226888 (-)
XLOC_019603 NA non-coding downstream 902221 24679050 ~ 24686215 (-)
XLOC_019600 CR936479.1 non-coding downstream 1678233 23845537 ~ 23910203 (-)
XLOC_019597 NA non-coding downstream 2433914 23146291 ~ 23154522 (-)
XLOC_019633 NA non-coding upstream 646767 26251376 ~ 26395308 (-)
XLOC_019640 NA non-coding upstream 996352 26600961 ~ 26603641 (-)
XLOC_019643 BX465841.1 non-coding upstream 1097212 26701821 ~ 26701954 (-)
XLOC_019645 NA non-coding upstream 1216313 26820922 ~ 26825306 (-)
XLOC_019649 NA non-coding upstream 1583515 27188124 ~ 27191434 (-)

Expression


Co-expression Network