RNA id: TCONS_00039646


Basic Information

Item Value
RNA id TCONS_00039646
length 1752
lncRNA type sense_over
GC content 0.35
exon number 1
gene id XLOC_019624
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25747063 ~ 25748927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cACCGCGTTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAGCAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCGGCAGCTTTATCACGTAAGTAAAATAATCATATGTGTACGTAATTCTGTCTCATAGTGTCAGGTAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGATCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAACGTTAGGacaacatacatgtgaagttctgTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATTACAGAAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGAGATTTATTGCTGAAACAGTGGAGATGACAGATGCAGTGTAGCAGTGTAGATAGCATGCTTTCTATTTAGTcgataacattgtaattaaattggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctattgcaatatttattagttttttacattaatgaacaaatgcttattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatttttattcattagtaaattagtttaacaatgctaactattaaatattaaatagttattttaatagtgagcaaatacattaactaatgaaaccttattttaaagtgtgactaaagggagctacttttaaataatttaaatgaatgatttactgtgtagtttaatctgatgatattgctgcagatgcctttcaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtaggaaaaagaactactatgaatatcagtggttgcaagtttccacctttcttcaaagtattttttttgtgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactctatttaaaaacctattaatattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCAGTCAGAAGATCCATGCCATCGCCTGCTAGTTTATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttatcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagaggggtgattttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTAATTCAAGAAAACAACTGATTCAATGTCATTGTTTCTgttcatctgaataaaatatttttttcaaaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038628 lncRNA downstream 145567 25599088 ~ 25601609 (-) True XLOC_019616
TCONS_00038626 lncRNA downstream 149599 25595716 ~ 25597577 (-) False XLOC_019616
TCONS_00038612 lncRNA downstream 369165 25376752 ~ 25378011 (-) True XLOC_019609
TCONS_00039645 lncRNA downstream 520288 25221951 ~ 25226888 (-) True XLOC_019606
TCONS_00039644 lncRNA downstream 524656 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00038648 lncRNA upstream 47411 25796338 ~ 25799633 (-) True XLOC_019627
TCONS_00038652 lncRNA upstream 318083 26067010 ~ 26067893 (-) True XLOC_019629
TCONS_00039647 lncRNA upstream 502449 26251376 ~ 26255052 (-) False XLOC_019633
TCONS_00039648 lncRNA upstream 502449 26251376 ~ 26395229 (-) False XLOC_019633
TCONS_00038658 lncRNA upstream 502449 26251376 ~ 26395308 (-) False XLOC_019633
TCONS_00038642 mRNA downstream 5765 25739295 ~ 25741411 (-) False XLOC_019623
TCONS_00038643 mRNA downstream 6080 25740445 ~ 25741096 (-) True XLOC_019623
TCONS_00038641 mRNA downstream 24342 25704324 ~ 25722834 (-) True XLOC_019622
TCONS_00038637 mRNA downstream 61408 25676097 ~ 25685768 (-) False XLOC_019621
TCONS_00038639 mRNA downstream 61437 25685141 ~ 25685739 (-) True XLOC_019621
TCONS_00038645 mRNA upstream 5341 25754268 ~ 25756119 (-) True XLOC_019625
TCONS_00038646 mRNA upstream 24603 25773530 ~ 25774605 (-) True XLOC_019626
TCONS_00038647 mRNA upstream 46948 25795875 ~ 25801956 (-) False XLOC_019627
TCONS_00038649 mRNA upstream 272569 26021496 ~ 26028205 (-) True XLOC_019628
TCONS_00038650 mRNA upstream 313525 26062452 ~ 26071773 (-) False XLOC_019629
TCONS_00038640 other downstream 24384 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 121993 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 133979 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038618 other downstream 283812 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038597 other downstream 2000229 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038657 other upstream 403915 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038671 other upstream 952894 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038674 other upstream 1169001 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 1456072 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 1733222 27482149 ~ 27483038 (-) False XLOC_019657

Expression Profile

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