RNA id: TCONS_00038652


Basic Information

Item Value
RNA id TCONS_00038652
length 576
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_019629
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26062452 ~ 26071773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaccacctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccagtggacaccggcattgggccaactgggtggaccttacaccCCCAAAACTGGCGggaatagctggtggttcattctgctgtggtgacctctgaaataaagactaagctgaaggaaaatgaataaatgaatgaataaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgttctctaTGTTTTTAGATTAAATGTAGCCAAAGTCATTGTCGTTGGTGATGTTGGGGTCGGGAAGACCTGTTTAATAAACAGATTCTGCAAAGACTCATTTGACAGAACGTACAAGGCAACTATTGGAGTGGATTTTGAGATGGAGAGATTTGAAGTTCTCGGGGTACCCTTCAGTTTGCAGCtGTGGGACACAGCAGGTCAGGAAAGATTTCGATGCATTGCCTCCACATACTACAGAGGAGCGCAAGCCATCATCGTTGTGTTTGACCTGAGCAACTATGAGTCTCTGGATCA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0090385 phagosome-lysosome fusion biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-61 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endocytosis and phagosome-lysosome fusion. Orthologous to human RAB34 (RAB34, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000144176

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038648 lncRNA downstream 267377 25796338 ~ 25799633 (-) True XLOC_019627
TCONS_00039646 lncRNA downstream 318083 25747176 ~ 25748927 (-) True XLOC_019624
TCONS_00038628 lncRNA downstream 465401 25599088 ~ 25601609 (-) True XLOC_019616
TCONS_00038626 lncRNA downstream 469433 25595716 ~ 25597577 (-) False XLOC_019616
TCONS_00038612 lncRNA downstream 688999 25376752 ~ 25378011 (-) True XLOC_019609
TCONS_00039647 lncRNA upstream 183483 26251376 ~ 26255052 (-) False XLOC_019633
TCONS_00039648 lncRNA upstream 183483 26251376 ~ 26395229 (-) False XLOC_019633
TCONS_00038658 lncRNA upstream 183483 26251376 ~ 26395308 (-) False XLOC_019633
TCONS_00039649 lncRNA upstream 261587 26329480 ~ 26395308 (-) False XLOC_019633
TCONS_00039650 lncRNA upstream 288139 26356032 ~ 26395302 (-) True XLOC_019633
TCONS_00038649 mRNA downstream 38805 26021496 ~ 26028205 (-) True XLOC_019628
TCONS_00038647 mRNA downstream 265054 25795875 ~ 25801956 (-) False XLOC_019627
TCONS_00038646 mRNA downstream 292405 25773530 ~ 25774605 (-) True XLOC_019626
TCONS_00038645 mRNA downstream 310891 25754268 ~ 25756119 (-) True XLOC_019625
TCONS_00038644 mRNA downstream 318097 25747063 ~ 25748913 (-) False XLOC_019624
TCONS_00038653 mRNA upstream 12322 26080215 ~ 26089964 (-) True XLOC_019630
TCONS_00038654 mRNA upstream 29839 26097732 ~ 26114886 (-) True XLOC_019631
TCONS_00038655 mRNA upstream 84439 26152332 ~ 26250443 (-) False XLOC_019632
TCONS_00038656 mRNA upstream 84439 26152332 ~ 26250744 (-) False XLOC_019632
TCONS_00038659 mRNA upstream 333439 26401332 ~ 26406304 (-) False XLOC_019634
TCONS_00038640 other downstream 344218 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 441827 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 453813 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038618 other downstream 603646 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038597 other downstream 2320063 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038657 other upstream 84949 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038671 other upstream 633928 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038674 other upstream 850035 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 1137106 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 1414256 27482149 ~ 27483038 (-) False XLOC_019657

Expression Profile

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