RNA id: TCONS_00038654


Basic Information

Item Value
RNA id TCONS_00038654
length 2973
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_019631
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26097732 ~ 26114886 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCGTGGCTCCTCCGCCGATACCTGCTCTGCGCGTGGCCGTGTTCGCGTGCGCGTGCTTCACAGGTATCATATATTCCTGTTCTTCAGAGCGGTGAAGTTACGCGCGAGGATGCAGAGCTCTTATTCTGGATATATTTAGATGAACCGATAGAAACATGTTCATGTCTTGTAGTTTATTCTgatagttttgttgtttttaaatggcttCTTTTCGGTAATTTTAACGCGTCGGTTTAATGGGTGTAACAATGAAAGACATACACCTGCCATCCGATTCATGCATCAATGGTTCAGTAATAAGGATCTTTTGTCCCACATCCGCCTCCATTTGTGTGTTTGACACGGCTGTTGGCAACACGTCTTATAGTTTGGACAACTCCAATAAAAATTTGACAGTCAGCACACAATCTCTAGCCATTGACAAATGGAGCAATTACAACTTCTGGACGGGCTTGACACTGGCCGTCCTCTCAGCGTTTCTCATAGGAGGAAGTGTTATCCTGAAAAAGAAGGCACTGCTGCGTTTGGCCAATACTGGGGAGACGAGAGCAGCCGAGGGAGGTCATGGGTACCTGAAAGACTGGCTATGGTGGGGAGGCCTTTTGACAATGGGCGGAGGTGAAGCAGCAAATTTCGCAGCCTACATGTTTGCTCCAGCCACAGTGGTGACCCCGCTAGGAGCTCTCAGTGTTCTTATTAGCGCGGTGCTGTCCTCCCACTTGTTCAGAGAAACAATGAATCTGCTTGGAAAATTGGGCTGCATGCTCAGCGTACTGGGAAGCACTTTAATGGTTATACATGCACCTGAAGAAGAAGAGGTGACCACACTTAAAGAAATGGCCGAGAAACTCCTTGATCCTGGTTTTCTGGTGTTTGCCAGCATCCTGTTGGTCACTTGTTTAATCCTGATCTTCTACGTCTCTCCTCGATTTGGTCAGTCTAATATATTGGTATACATCAGCATCTGCTCTCTGCTCGGATCCTTTACTGTGTCCTCTGTCAAGGGTCTTGGCATTGCCATCCGCACCATGTTCACAGACACTTCAGTGGTCCGTAATCCTCTCATGTGGATTCTTTTGCTGACCTTAATTGGATCCATCATCATTCAGGTCAACTATCTGAACAAATCCCTGGATACTTTCAATACTCTTTTGGTTTACCCCATCTACTACGTCTTCTTCACCACAGTGGTCCTGAGCACGTCTGTGATCCTTTTTAAGGAATGGGGTGCCATGTCAGGAGTGGATGTGGTGGGCACCATTGGGGCATTTTTGGTGATTGTGATTGGGGTGAGCATGCTTAACATCTTCAAGGATTTGAATGTATGTTTTGAAGATCTGAGAAGTAATCTTTGTCAGCCACTGAGTCAGGAGAGCCCGTCAAAGAGGGAGGACAAGCACATCCTCATAGAGAATATAGAAACTCTGCCGCCCATGAGAGAGGAAGGGCCCAGAGTCTTCATCATCAGCTGAgagtgtgaatatatatatatatatacataaaagtcTTGTctattccagttgtaagagcaaaaaagaATAACTTgtgttctagttgatcatttggaaaagtggcagaaggcagttttttttttttgattaatctgttgaactgcatcccaatcattacagatactgcagaagacccattGGAACCCACATCGACCCAAGAATcttagagaaatcagtcaagtttggtgaagaaaaaatcatggtttggggttcagtGTGGGGCgtgcaaaagatctgcagagtggatggcaaattcttcagcaagatagtgctccttctcatactttaacctccacatcaaagttcctgaaagcaaagaagatcaaggtgctccaggattggccagcctagtcaccagatatgaacattattgagcatgtcttgggtaagatgaaagaggtcctccaagaacgctttctttgccattccagatgactttattaataagttatttgaatcatttcagagatgtatggatgcagtcgtcgaagctcatacacaatattaattctttaacaagacaagacttttgtctaagcaaagtcagatctttctgtcctaattaaataactaaaatcaaggcatgatcatattttttggtaaaataagcgtaatctagaggtaaTCTTGCCTTTCATatgtcacttctgataccaaatgatcataTAGAAGTCAAGTTAGTATTTGTTCTTCCTAAAACTGGATAGGCatcaagacttttatcaggtattgtacagtagtcaacatttaaagtagaTTAAAACCTTTCATCagagttgtcctaaaactattgaacaacacccactcttgttttaggacaatttttaaaaagtttttgatcCACTTGAAATGTTGACTACTGCACTGTATATAATTTTGAAAATGCAGTTTTATGATATCATCACTCTTTTTTGTTCACTTCCTCTGCTGAAAGCCATACTGTGATGCAGTGATTTGGATTGGTTACTGCTGAATATGGTGATGATGCAGACCTTTTTCTTCTACTCAAAATGGGTgatgattaatattaaaatagcaTATACAGAATATGATGTGGCAGAATATAAAATCCTGCTACTGAGAACTGACATTTTATGTAAATGATTATACAGTCAATACAGTTGgtatatttttctgtttattggaaCGGTATAGGTTATACCTGCGAAATAAGACAAATGAACTGAATATATTTACACATGctgtaaaaaagaaatatttcacAGAAAATATGCTGTATTTGAAATATGCTGATACATATATTACATACTACATTTCATGAAATTCctaacatttaattaaacagtGATATTAGAGGCCATGCTGTTTTCTAAATCAATGTGGCGCCTGTATTCATCCTGCATCATGCCTCAAGTATGTCTGTTACTGCCTAATGCAAATATTTAAGGAAAAATATGtgtaataatgttacttttttaaaataaaatcattgaaTTCCA

Function

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-412 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 6. Orthologous to human NIPAL4 (NIPA like domain containing 4).

Ensembl:

ensembl_id ENSDART00000139320

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038652 lncRNA downstream 29839 26067010 ~ 26067893 (-) True XLOC_019629
TCONS_00038648 lncRNA downstream 298099 25796338 ~ 25799633 (-) True XLOC_019627
TCONS_00039646 lncRNA downstream 348805 25747176 ~ 25748927 (-) True XLOC_019624
TCONS_00038628 lncRNA downstream 496123 25599088 ~ 25601609 (-) True XLOC_019616
TCONS_00038626 lncRNA downstream 500155 25595716 ~ 25597577 (-) False XLOC_019616
TCONS_00039647 lncRNA upstream 136490 26251376 ~ 26255052 (-) False XLOC_019633
TCONS_00039648 lncRNA upstream 136490 26251376 ~ 26395229 (-) False XLOC_019633
TCONS_00038658 lncRNA upstream 136490 26251376 ~ 26395308 (-) False XLOC_019633
TCONS_00039649 lncRNA upstream 214594 26329480 ~ 26395308 (-) False XLOC_019633
TCONS_00039650 lncRNA upstream 241146 26356032 ~ 26395302 (-) True XLOC_019633
TCONS_00038653 mRNA downstream 7768 26080215 ~ 26089964 (-) True XLOC_019630
TCONS_00038650 mRNA downstream 25959 26062452 ~ 26071773 (-) False XLOC_019629
TCONS_00038651 mRNA downstream 26590 26062799 ~ 26071142 (-) False XLOC_019629
TCONS_00038649 mRNA downstream 69527 26021496 ~ 26028205 (-) True XLOC_019628
TCONS_00038647 mRNA downstream 295776 25795875 ~ 25801956 (-) False XLOC_019627
TCONS_00038655 mRNA upstream 37446 26152332 ~ 26250443 (-) False XLOC_019632
TCONS_00038656 mRNA upstream 37446 26152332 ~ 26250744 (-) False XLOC_019632
TCONS_00038659 mRNA upstream 286446 26401332 ~ 26406304 (-) False XLOC_019634
TCONS_00038660 mRNA upstream 289349 26404235 ~ 26406244 (-) True XLOC_019634
TCONS_00038661 mRNA upstream 293130 26408016 ~ 26483237 (-) False XLOC_019635
TCONS_00038640 other downstream 374940 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 472549 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 484535 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038618 other downstream 634368 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038597 other downstream 2350785 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038657 other upstream 37956 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038671 other upstream 586935 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038674 other upstream 803042 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 1090113 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 1367263 27482149 ~ 27483038 (-) False XLOC_019657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_04100433_04105606.mRNA True 1600 mRNA 0.47 6 CI01000006 4100062 ~ 4105617 (+)